miRNA display CGI


Results 101 - 120 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 77011 0.66 0.994104
Target:  5'- gACCCGguAcu-GAGCGCGCGcUUCUu -3'
miRNA:   3'- aUGGGCguUuuuUUUGCGCGC-AGGGu -5'
24357 5' -50.6 NC_005264.1 + 53254 0.66 0.994104
Target:  5'- -cCCCGCG-----GGCGCGUGUCUg- -3'
miRNA:   3'- auGGGCGUuuuuuUUGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 115815 0.66 0.994931
Target:  5'- --aCCGCG--GGAGGC-CGCGUUCCAc -3'
miRNA:   3'- augGGCGUuuUUUUUGcGCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 135553 0.66 0.994931
Target:  5'- --aCCGCGAugacuuucGAGAAGcCGCGCGUCgCu -3'
miRNA:   3'- augGGCGUU--------UUUUUU-GCGCGCAGgGu -5'
24357 5' -50.6 NC_005264.1 + 149384 0.66 0.995452
Target:  5'- -cCCCGCAGGAgccccuucggcgccGccGCGuCGCGUCUCGg -3'
miRNA:   3'- auGGGCGUUUU--------------UuuUGC-GCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 48790 0.66 0.995662
Target:  5'- gGCCgGCGGGGcGAACGaccuCGCGuuUCCCAc -3'
miRNA:   3'- aUGGgCGUUUUuUUUGC----GCGC--AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 139294 0.66 0.990955
Target:  5'- cAUCCGCGGu---AGCGCguaGCGUUCCGc -3'
miRNA:   3'- aUGGGCGUUuuuuUUGCG---CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 29892 0.66 0.990955
Target:  5'- cUugCCGCGAAG---GCGUGCGgcgcuacCCCGu -3'
miRNA:   3'- -AugGGCGUUUUuuuUGCGCGCa------GGGU- -5'
24357 5' -50.6 NC_005264.1 + 121416 0.67 0.98661
Target:  5'- cGCCCGCAGGAGcccGGCGC-CGgccugCCUAg -3'
miRNA:   3'- aUGGGCGUUUUUu--UUGCGcGCa----GGGU- -5'
24357 5' -50.6 NC_005264.1 + 117314 0.67 0.988054
Target:  5'- cGCgUGCGAcuGAGAAGCGUGCGcgggucgUCCCu -3'
miRNA:   3'- aUGgGCGUU--UUUUUUGCGCGC-------AGGGu -5'
24357 5' -50.6 NC_005264.1 + 16448 0.67 0.988207
Target:  5'- cUGCCCGCGGGuguGAACGUG-GUCgaaCCAg -3'
miRNA:   3'- -AUGGGCGUUUuu-UUUGCGCgCAG---GGU- -5'
24357 5' -50.6 NC_005264.1 + 62596 0.67 0.988207
Target:  5'- gACCgCGCGAAGuagcGGCGCGgaCGUUCCGa -3'
miRNA:   3'- aUGG-GCGUUUUuu--UUGCGC--GCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 717 0.67 0.988207
Target:  5'- aUGCgCCGCGAAAGAGauuACGC-CGaUCCUAg -3'
miRNA:   3'- -AUG-GGCGUUUUUUU---UGCGcGC-AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 8906 0.67 0.988207
Target:  5'- --gUCGCu--GGAGACGCGCGUCUUc -3'
miRNA:   3'- augGGCGuuuUUUUUGCGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 34199 0.67 0.988207
Target:  5'- cAgCCGCGGcauGGAGCgcauacuugGCGUGUCCCAa -3'
miRNA:   3'- aUgGGCGUUuu-UUUUG---------CGCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 52709 0.67 0.988207
Target:  5'- cGCCCGCccccAAAAGCGCgGCGgcUCUCGg -3'
miRNA:   3'- aUGGGCGuuu-UUUUUGCG-CGC--AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 93579 0.67 0.989514
Target:  5'- cGCCCcauggcaGCGGAuGAGGCGCGCGaguaCCAg -3'
miRNA:   3'- aUGGG-------CGUUUuUUUUGCGCGCag--GGU- -5'
24357 5' -50.6 NC_005264.1 + 153452 0.67 0.989652
Target:  5'- uUGCCUGCGAguGAGGAAUcuguuaGUGUCCCGg -3'
miRNA:   3'- -AUGGGCGUU--UUUUUUGcg----CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 158254 0.67 0.989652
Target:  5'- cGCUgGCGGGGAGGGCcUGCGuUCCCGg -3'
miRNA:   3'- aUGGgCGUUUUUUUUGcGCGC-AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 161470 0.67 0.99019
Target:  5'- gAUCCGCGAAAAgggggugacguAGACaccgggcucaggucuGCGUGUCCCc -3'
miRNA:   3'- aUGGGCGUUUUU-----------UUUG---------------CGCGCAGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.