miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24358 3' -54.8 NC_005264.1 + 104121 0.66 0.938034
Target:  5'- gUCCCCCUGGUGGccgcccgccuaguaaACgcgGCCgucAUAGAg -3'
miRNA:   3'- aGGGGGGACCGCU---------------UGa--UGGa--UAUCUg -5'
24358 3' -54.8 NC_005264.1 + 46962 0.66 0.93608
Target:  5'- gCCCCCCgggUGGCGGGCUcgagaacccaaACUUGguucuGGCu -3'
miRNA:   3'- aGGGGGG---ACCGCUUGA-----------UGGAUau---CUG- -5'
24358 3' -54.8 NC_005264.1 + 156944 0.66 0.93608
Target:  5'- cUCCgCCgaGGCGuACUACCUcaacuacUGGACc -3'
miRNA:   3'- -AGGgGGgaCCGCuUGAUGGAu------AUCUG- -5'
24358 3' -54.8 NC_005264.1 + 37242 0.66 0.931026
Target:  5'- --gCCCCUGGgGGGCgcaucACC-GUGGACg -3'
miRNA:   3'- aggGGGGACCgCUUGa----UGGaUAUCUG- -5'
24358 3' -54.8 NC_005264.1 + 156269 0.66 0.931026
Target:  5'- --gCCCCUGGgGGGCgcaucACC-GUGGACg -3'
miRNA:   3'- aggGGGGACCgCUUGa----UGGaUAUCUG- -5'
24358 3' -54.8 NC_005264.1 + 69936 0.67 0.922435
Target:  5'- aUCCCCCggcucccgUUGGCGGuuugcgucggaagacGCUACCUu--GGCg -3'
miRNA:   3'- -AGGGGG--------GACCGCU---------------UGAUGGAuauCUG- -5'
24358 3' -54.8 NC_005264.1 + 130369 0.67 0.92019
Target:  5'- aCCgUUCUGGCGAggaACUGCCaucugGGGCa -3'
miRNA:   3'- aGGgGGGACCGCU---UGAUGGaua--UCUG- -5'
24358 3' -54.8 NC_005264.1 + 11342 0.67 0.92019
Target:  5'- aCCgUUCUGGCGAggaACUGCCaucugGGGCa -3'
miRNA:   3'- aGGgGGGACCGCU---UGAUGGaua--UCUG- -5'
24358 3' -54.8 NC_005264.1 + 92223 0.67 0.900194
Target:  5'- gUUCCUCCUGGCGAGCgggaacaacuucuaUGCCg--AGGu -3'
miRNA:   3'- -AGGGGGGACCGCUUG--------------AUGGauaUCUg -5'
24358 3' -54.8 NC_005264.1 + 140563 0.67 0.894956
Target:  5'- aCCCUgCUGGCGAgacaacggaaucuGCUguuACCUGguuagAGGCg -3'
miRNA:   3'- aGGGGgGACCGCU-------------UGA---UGGAUa----UCUG- -5'
24358 3' -54.8 NC_005264.1 + 119399 0.68 0.870309
Target:  5'- uUCCCCCCUcucuggcgGucgcguccuggaguuGCGGACUACCag-AGACg -3'
miRNA:   3'- -AGGGGGGA--------C---------------CGCUUGAUGGauaUCUG- -5'
24358 3' -54.8 NC_005264.1 + 372 0.68 0.870309
Target:  5'- uUCCCCCCUcucuggcgGucgcguccuggaguuGCGGACUACCag-AGACg -3'
miRNA:   3'- -AGGGGGGA--------C---------------CGCUUGAUGGauaUCUG- -5'
24358 3' -54.8 NC_005264.1 + 141737 0.68 0.867318
Target:  5'- aCCCCCCUGGCauAACUACgCUccacgAUGccGACg -3'
miRNA:   3'- aGGGGGGACCGc-UUGAUG-GA-----UAU--CUG- -5'
24358 3' -54.8 NC_005264.1 + 92364 0.68 0.859692
Target:  5'- gCCCCCCUGG-GcACUACCccacacuGGCg -3'
miRNA:   3'- aGGGGGGACCgCuUGAUGGauau---CUG- -5'
24358 3' -54.8 NC_005264.1 + 137283 0.68 0.855015
Target:  5'- gCUCCCCUGGaCGAGCgcgacaagcGCCUuguccgcgccgccuuAUGGGCg -3'
miRNA:   3'- aGGGGGGACC-GCUUGa--------UGGA---------------UAUCUG- -5'
24358 3' -54.8 NC_005264.1 + 150277 0.7 0.804444
Target:  5'- gUCCCCCCUcagcgguaucuucgcGGCGAACgccccccgcuccUACCggcUAGAUg -3'
miRNA:   3'- -AGGGGGGA---------------CCGCUUG------------AUGGau-AUCUG- -5'
24358 3' -54.8 NC_005264.1 + 31250 0.7 0.804444
Target:  5'- gUCCCCCCUcagcgguaucuucgcGGCGAACgccccccgcuccUACCggcUAGAUg -3'
miRNA:   3'- -AGGGGGGA---------------CCGCUUG------------AUGGau-AUCUG- -5'
24358 3' -54.8 NC_005264.1 + 104522 0.7 0.80085
Target:  5'- aCCCUCCUGGCucACcggGCCUAUaaGGAa -3'
miRNA:   3'- aGGGGGGACCGcuUGa--UGGAUA--UCUg -5'
24358 3' -54.8 NC_005264.1 + 74625 0.7 0.77314
Target:  5'- gUUCCCCCUGGCGcucAugUcCCUcgAGAa -3'
miRNA:   3'- -AGGGGGGACCGC---UugAuGGAuaUCUg -5'
24358 3' -54.8 NC_005264.1 + 138742 1.1 0.003359
Target:  5'- cUCCCCCCUGGCGAACUACCUAUAGACu -3'
miRNA:   3'- -AGGGGGGACCGCUUGAUGGAUAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.