Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24359 | 3' | -52 | NC_005264.1 | + | 64762 | 0.67 | 0.970227 |
Target: 5'- --gGGGcGGCCgGGGCACAccauGCAACa -3' miRNA: 3'- agaCCCuUCGG-UCCGUGUucu-UGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 3299 | 0.67 | 0.970227 |
Target: 5'- --cGGGGAGUgAGGgGCuuccGAACGGCg -3' miRNA: 3'- agaCCCUUCGgUCCgUGuu--CUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 139738 | 0.67 | 0.970227 |
Target: 5'- gUUGGGAGG-CGGGCgGCA--GACAACg -3' miRNA: 3'- aGACCCUUCgGUCCG-UGUucUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 53308 | 0.67 | 0.966768 |
Target: 5'- --cGGGAAGUCugcccagGGGCugcuuggccaGCAGGGGCAGCc -3' miRNA: 3'- agaCCCUUCGG-------UCCG----------UGUUCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 44881 | 0.67 | 0.965105 |
Target: 5'- cCUGGGGAGgCGGGCccgucgucgucugggGCGGGAGgAGa -3' miRNA: 3'- aGACCCUUCgGUCCG---------------UGUUCUUgUUg -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 123386 | 0.67 | 0.963734 |
Target: 5'- cCUGuuGGAGGCguGGUGCGAGAuGCAGa -3' miRNA: 3'- aGAC--CCUUCGguCCGUGUUCU-UGUUg -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 103698 | 0.67 | 0.963734 |
Target: 5'- --gGGGAAGUUgaGGGC-CAguGGAGCGGCg -3' miRNA: 3'- agaCCCUUCGG--UCCGuGU--UCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 41368 | 0.67 | 0.963734 |
Target: 5'- cUCcGGGAAGaaCGGGCACAcGGACGu- -3' miRNA: 3'- -AGaCCCUUCg-GUCCGUGUuCUUGUug -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 146611 | 0.67 | 0.963734 |
Target: 5'- aCUGGGAGG--GGGCucaGAGggUAGCg -3' miRNA: 3'- aGACCCUUCggUCCGug-UUCuuGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 132392 | 0.67 | 0.970227 |
Target: 5'- aCUGGuGAacguGGCCgcAGGCACGAGcuACAAg -3' miRNA: 3'- aGACC-CU----UCGG--UCCGUGUUCu-UGUUg -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 88545 | 0.67 | 0.973141 |
Target: 5'- aCUGuGgcGCCgcAGGUACGAGAucGCGGCg -3' miRNA: 3'- aGACcCuuCGG--UCCGUGUUCU--UGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 124755 | 0.67 | 0.973141 |
Target: 5'- --cGGGggGCCAaggaagcacGGCGgguaggcauugUGAGAGCGGCg -3' miRNA: 3'- agaCCCuuCGGU---------CCGU-----------GUUCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 56918 | 0.66 | 0.982755 |
Target: 5'- -aUGGGGcggcguacguGCguGGCGCAcGGGGCGACg -3' miRNA: 3'- agACCCUu---------CGguCCGUGU-UCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 88233 | 0.66 | 0.982755 |
Target: 5'- --gGGGAacguggGGUCAGGCGCGGGGuCAu- -3' miRNA: 3'- agaCCCU------UCGGUCCGUGUUCUuGUug -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 68192 | 0.66 | 0.982755 |
Target: 5'- gUUUGGGcuuGGUUAGGUACAGGuauauccuCAGCg -3' miRNA: 3'- -AGACCCu--UCGGUCCGUGUUCuu------GUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 43583 | 0.66 | 0.982755 |
Target: 5'- gCUGuGgcGCCAGGCAC-GGAaaGCGAUc -3' miRNA: 3'- aGACcCuuCGGUCCGUGuUCU--UGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 38353 | 0.66 | 0.981509 |
Target: 5'- gCUGGGcGGCgGGGCGguUaggaccuccuccggcGAGAGCGGCg -3' miRNA: 3'- aGACCCuUCGgUCCGU--G---------------UUCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 2947 | 0.66 | 0.980642 |
Target: 5'- --cGGGAagacGGCgAGGaagaugACGAGGACGACg -3' miRNA: 3'- agaCCCU----UCGgUCCg-----UGUUCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 30028 | 0.66 | 0.978341 |
Target: 5'- gCUGcGGAGGUUAGGCAaauggGGGAAuCGGCu -3' miRNA: 3'- aGAC-CCUUCGGUCCGUg----UUCUU-GUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 8765 | 0.66 | 0.975843 |
Target: 5'- cUCUGGGGAGaggcgaacggCGGGCGuCGgccAGGACGGCc -3' miRNA: 3'- -AGACCCUUCg---------GUCCGU-GU---UCUUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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