miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24359 3' -52 NC_005264.1 + 50406 0.66 0.975843
Target:  5'- --aGGGggGUgGauauGGUacGCAAGAGCAACu -3'
miRNA:   3'- agaCCCuuCGgU----CCG--UGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 56176 0.66 0.978341
Target:  5'- gUCUaGGGggGCUAGGCucucACGGGGuugguCAGa -3'
miRNA:   3'- -AGA-CCCuuCGGUCCG----UGUUCUu----GUUg -5'
24359 3' -52 NC_005264.1 + 60618 0.71 0.836057
Target:  5'- --cGcGGcAGCCGGcucGCGCAGGAGCAGCa -3'
miRNA:   3'- agaC-CCuUCGGUC---CGUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 18525 0.67 0.963734
Target:  5'- aUCgGGGgcGCCgucucccccugaGGGCGCGccggcgucagucGGAGCGGCa -3'
miRNA:   3'- -AGaCCCuuCGG------------UCCGUGU------------UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 84204 0.72 0.790919
Target:  5'- gCUGGaGcgaggaggacGAGCUAGGCACAAGAAUgcgAGCg -3'
miRNA:   3'- aGACC-C----------UUCGGUCCGUGUUCUUG---UUG- -5'
24359 3' -52 NC_005264.1 + 79211 0.66 0.975843
Target:  5'- cCUGGG--GCUAGGCugcguGCAGGcGGCGGCg -3'
miRNA:   3'- aGACCCuuCGGUCCG-----UGUUC-UUGUUG- -5'
24359 3' -52 NC_005264.1 + 127791 0.66 0.975843
Target:  5'- cUCUGGGGAGaggcgaacggCGGGCGuCGgccAGGACGGCc -3'
miRNA:   3'- -AGACCCUUCg---------GUCCGU-GU---UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 48067 0.74 0.700823
Target:  5'- --aGGGAcaucGGCCGagcGGCGCAGGGACAAg -3'
miRNA:   3'- agaCCCU----UCGGU---CCGUGUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 48338 0.66 0.978341
Target:  5'- cCUGGGGAGUUGGcGCACGccauGGCGGCc -3'
miRNA:   3'- aGACCCUUCGGUC-CGUGUuc--UUGUUG- -5'
24359 3' -52 NC_005264.1 + 147585 0.7 0.883571
Target:  5'- aCgGGGAacGGUcgCAGGCGCAugcAGAACGACc -3'
miRNA:   3'- aGaCCCU--UCG--GUCCGUGU---UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 54532 0.7 0.89755
Target:  5'- uUCUGGc--GCgAGGCAacgaaGAGAGCAGCa -3'
miRNA:   3'- -AGACCcuuCGgUCCGUg----UUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 58364 0.66 0.98469
Target:  5'- cUCUGGcGggGCC-GGCGCGAuauGCGc- -3'
miRNA:   3'- -AGACC-CuuCGGuCCGUGUUcu-UGUug -5'
24359 3' -52 NC_005264.1 + 160395 0.67 0.963734
Target:  5'- cUCcGGGAAGaaCGGGCACAcGGACGu- -3'
miRNA:   3'- -AGaCCCUUCg-GUCCGUGUuCUUGUug -5'
24359 3' -52 NC_005264.1 + 12765 0.67 0.970227
Target:  5'- -aUGGGGcagcGCCGGGCACA---ACGAUg -3'
miRNA:   3'- agACCCUu---CGGUCCGUGUucuUGUUG- -5'
24359 3' -52 NC_005264.1 + 19416 0.67 0.970227
Target:  5'- --gGGGAGGCgAGGCGCcGGGugugGCcGCg -3'
miRNA:   3'- agaCCCUUCGgUCCGUGuUCU----UGuUG- -5'
24359 3' -52 NC_005264.1 + 122326 0.67 0.970227
Target:  5'- --cGGGGAGUgAGGgGCuuccGAACGGCg -3'
miRNA:   3'- agaCCCUUCGgUCCgUGuu--CUUGUUG- -5'
24359 3' -52 NC_005264.1 + 125801 0.69 0.933436
Target:  5'- aCaaGGGAGCCAGGgAUggGuGCGGCg -3'
miRNA:   3'- aGacCCUUCGGUCCgUGuuCuUGUUG- -5'
24359 3' -52 NC_005264.1 + 50261 0.69 0.933436
Target:  5'- cUCUGGGGAcGCCAuGGcCGCgGAGAucacCAACg -3'
miRNA:   3'- -AGACCCUU-CGGU-CC-GUG-UUCUu---GUUG- -5'
24359 3' -52 NC_005264.1 + 136649 0.69 0.928097
Target:  5'- -gUGGGAAGUgGGGCGCc--AACGGCc -3'
miRNA:   3'- agACCCUUCGgUCCGUGuucUUGUUG- -5'
24359 3' -52 NC_005264.1 + 64397 0.69 0.9225
Target:  5'- cUCU-GGAAGCCcGGC-CAAGGcCGACg -3'
miRNA:   3'- -AGAcCCUUCGGuCCGuGUUCUuGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.