miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24361 3' -56.8 NC_005264.1 + 96625 0.66 0.908342
Target:  5'- gCCaAGUCCUUCgCUGGC-CGCG-GAGg -3'
miRNA:   3'- aGG-UCAGGAAGgGGUUGcGCGCaCUC- -5'
24361 3' -56.8 NC_005264.1 + 9848 0.66 0.908342
Target:  5'- aUCCAGUUCUccUCCUCGccCGCGcCG-GAGa -3'
miRNA:   3'- -AGGUCAGGA--AGGGGUu-GCGC-GCaCUC- -5'
24361 3' -56.8 NC_005264.1 + 133363 0.66 0.905917
Target:  5'- cCUAGcCCUgcgcugcaccgccCCCCAAUcCGCGUGGGg -3'
miRNA:   3'- aGGUCaGGAa------------GGGGUUGcGCGCACUC- -5'
24361 3' -56.8 NC_005264.1 + 117715 0.66 0.902212
Target:  5'- gUCUGGUUCUUCgCCCcACGCGgacgaGUGAu -3'
miRNA:   3'- -AGGUCAGGAAG-GGGuUGCGCg----CACUc -5'
24361 3' -56.8 NC_005264.1 + 45658 0.66 0.882469
Target:  5'- -gCAGagucgCCUUCCCCGGCcCGCuucauGUGAGa -3'
miRNA:   3'- agGUCa----GGAAGGGGUUGcGCG-----CACUC- -5'
24361 3' -56.8 NC_005264.1 + 29005 0.66 0.87545
Target:  5'- ---uGUUUUUCCCCAuCGCGCGUcccuuGAGg -3'
miRNA:   3'- agguCAGGAAGGGGUuGCGCGCA-----CUC- -5'
24361 3' -56.8 NC_005264.1 + 68438 0.66 0.87545
Target:  5'- -gCAGUCCgcgCCgCGgucuGCGCGCG-GAGg -3'
miRNA:   3'- agGUCAGGaa-GGgGU----UGCGCGCaCUC- -5'
24361 3' -56.8 NC_005264.1 + 8566 0.66 0.874736
Target:  5'- aUCCAGaUCUagguaucUCCCCGuaugaccgcagACGCGCGUGu- -3'
miRNA:   3'- -AGGUCaGGA-------AGGGGU-----------UGCGCGCACuc -5'
24361 3' -56.8 NC_005264.1 + 143758 0.67 0.868218
Target:  5'- -gCAGUCCUggcUCCCU-AUGCGCGgGAa -3'
miRNA:   3'- agGUCAGGA---AGGGGuUGCGCGCaCUc -5'
24361 3' -56.8 NC_005264.1 + 42631 0.67 0.853141
Target:  5'- cCCGGUCCgcugcguacCCCCAuCGCGCGc--- -3'
miRNA:   3'- aGGUCAGGaa-------GGGGUuGCGCGCacuc -5'
24361 3' -56.8 NC_005264.1 + 103280 0.67 0.837283
Target:  5'- --aGGUCCUaagCCCCGACGC-CGUGc- -3'
miRNA:   3'- aggUCAGGAa--GGGGUUGCGcGCACuc -5'
24361 3' -56.8 NC_005264.1 + 161658 0.68 0.820699
Target:  5'- cCCGGUCCgcugcguaCCCCAuCGCGCGc--- -3'
miRNA:   3'- aGGUCAGGaa------GGGGUuGCGCGCacuc -5'
24361 3' -56.8 NC_005264.1 + 39628 0.68 0.818152
Target:  5'- cUCCcGUCCcucggacccuccgcUUCCCCAcacCGCGgCGUGGGc -3'
miRNA:   3'- -AGGuCAGG--------------AAGGGGUu--GCGC-GCACUC- -5'
24361 3' -56.8 NC_005264.1 + 127854 0.68 0.812152
Target:  5'- -gCGGUCUagaaCCCGGCGCGCGaaUGGGg -3'
miRNA:   3'- agGUCAGGaag-GGGUUGCGCGC--ACUC- -5'
24361 3' -56.8 NC_005264.1 + 136645 0.69 0.767195
Target:  5'- cCCGGcggagCCUCGACGCGCGUGGa -3'
miRNA:   3'- aGGUCaggaaGGGGUUGCGCGCACUc -5'
24361 3' -56.8 NC_005264.1 + 85128 0.69 0.738747
Target:  5'- cUCCGGUUCUUggaaCUCCuGCGC-CGUGAGa -3'
miRNA:   3'- -AGGUCAGGAA----GGGGuUGCGcGCACUC- -5'
24361 3' -56.8 NC_005264.1 + 1165 0.7 0.669611
Target:  5'- gCCAGUCUg---CCGGCGCGCGaUGGGg -3'
miRNA:   3'- aGGUCAGGaaggGGUUGCGCGC-ACUC- -5'
24361 3' -56.8 NC_005264.1 + 120192 0.7 0.669611
Target:  5'- gCCAGUCUg---CCGGCGCGCGaUGGGg -3'
miRNA:   3'- aGGUCAGGaaggGGUUGCGCGC-ACUC- -5'
24361 3' -56.8 NC_005264.1 + 159646 0.71 0.618149
Target:  5'- gUCCugcgaaauaAGcCCUUCCCCGcgccgucGCGCGCG-GAGg -3'
miRNA:   3'- -AGG---------UCaGGAAGGGGU-------UGCGCGCaCUC- -5'
24361 3' -56.8 NC_005264.1 + 12916 0.72 0.578918
Target:  5'- cUCgCAGUCCUcCCCCGACGCGUccccgaucGAGa -3'
miRNA:   3'- -AG-GUCAGGAaGGGGUUGCGCGca------CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.