Results 61 - 73 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 88833 | 0.66 | 0.833014 |
Target: 5'- uCUCUCgGCGACCGcauGUacaACGCuCgGCg -3' miRNA: 3'- -GAGAGgCGCUGGCu--CA---UGCGuGgCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 144409 | 0.66 | 0.841022 |
Target: 5'- uUCgaccCCGCG-CCGAGcgagaggGCGCGCCuGCg -3' miRNA: 3'- gAGa---GGCGCuGGCUCa------UGCGUGG-CGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 16201 | 0.66 | 0.841022 |
Target: 5'- gUCUaCCG-GACaaCGGGggACGCGCCGCg -3' miRNA: 3'- gAGA-GGCgCUG--GCUCa-UGCGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 61450 | 0.66 | 0.841022 |
Target: 5'- -cCUCgGCG-CCGAGUugcucgaGCGCCGUUc -3' miRNA: 3'- gaGAGgCGCuGGCUCAug-----CGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 100217 | 0.66 | 0.848849 |
Target: 5'- -gCUCCGCGGggcgcaguugcUCGGaacGUcCGCGCCGCUa -3' miRNA: 3'- gaGAGGCGCU-----------GGCU---CAuGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 76263 | 0.66 | 0.848849 |
Target: 5'- gUCUCaCGCagaucGCCaGAGUGCGCACC-Cg -3' miRNA: 3'- gAGAG-GCGc----UGG-CUCAUGCGUGGcGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 41473 | 0.66 | 0.848849 |
Target: 5'- -aUUCCGCGugUGcGUACGUGCgCGUa -3' miRNA: 3'- gaGAGGCGCugGCuCAUGCGUG-GCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 133039 | 0.66 | 0.848849 |
Target: 5'- cCUUUCCGCGGC--GGUGCGCGuguuucuggcUCGCa -3' miRNA: 3'- -GAGAGGCGCUGgcUCAUGCGU----------GGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 70328 | 0.66 | 0.848849 |
Target: 5'- aCUCgUCCGCGgauccacagaugGCC-AG-GCGCACCGCc -3' miRNA: 3'- -GAG-AGGCGC------------UGGcUCaUGCGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 58865 | 0.66 | 0.848849 |
Target: 5'- gUUUCUuCGGCCGuagGGUGCGCAgCGCc -3' miRNA: 3'- gAGAGGcGCUGGC---UCAUGCGUgGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 68283 | 0.66 | 0.849622 |
Target: 5'- cCUCUuuGCGuCCccagcggcauuucucAGUGCgGCGCCGCUg -3' miRNA: 3'- -GAGAggCGCuGGc--------------UCAUG-CGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 23386 | 0.66 | 0.856491 |
Target: 5'- aUCUCuCGCGAaCGAGUuauAC-CGCCGCc -3' miRNA: 3'- gAGAG-GCGCUgGCUCA---UGcGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 29337 | 0.66 | 0.856491 |
Target: 5'- cCUC-CUGCGgcuacgacgucuGCCGGGUACGC-CgGCUu -3' miRNA: 3'- -GAGaGGCGC------------UGGCUCAUGCGuGgCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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