Results 61 - 73 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 61450 | 0.66 | 0.841022 |
Target: 5'- -cCUCgGCG-CCGAGUugcucgaGCGCCGUUc -3' miRNA: 3'- gaGAGgCGCuGGCUCAug-----CGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 16201 | 0.66 | 0.841022 |
Target: 5'- gUCUaCCG-GACaaCGGGggACGCGCCGCg -3' miRNA: 3'- gAGA-GGCgCUG--GCUCa-UGCGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 152303 | 0.66 | 0.824833 |
Target: 5'- --aUCCGCGcccCUGAGgGCgGCGCCGCa -3' miRNA: 3'- gagAGGCGCu--GGCUCaUG-CGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 88833 | 0.66 | 0.833014 |
Target: 5'- uCUCUCgGCGACCGcauGUacaACGCuCgGCg -3' miRNA: 3'- -GAGAGgCGCUGGCu--CA---UGCGuGgCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 79722 | 0.66 | 0.824833 |
Target: 5'- -cCUCCGCGGCCuug-GCGC-CCGUc -3' miRNA: 3'- gaGAGGCGCUGGcucaUGCGuGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 60724 | 0.66 | 0.824833 |
Target: 5'- ---gCCGCGGCCucGUAC-CGCCGCc -3' miRNA: 3'- gagaGGCGCUGGcuCAUGcGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 801 | 0.66 | 0.824833 |
Target: 5'- -gCUCCaguaCGGCUGGGUGCGCgGCCgGCUu -3' miRNA: 3'- gaGAGGc---GCUGGCUCAUGCG-UGG-CGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 160073 | 0.67 | 0.807981 |
Target: 5'- -aCUCCccagacgguacgGCG-CCGGGggACGCGCCGUUa -3' miRNA: 3'- gaGAGG------------CGCuGGCUCa-UGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 37787 | 0.67 | 0.807981 |
Target: 5'- aCUCgaggCgaGCGGCgGAGaagagGCGCGCCGCc -3' miRNA: 3'- -GAGa---Gg-CGCUGgCUCa----UGCGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 152515 | 0.67 | 0.790524 |
Target: 5'- cCUCguUCCGCGcuuGCUcAGUGCGCGUCGCUg -3' miRNA: 3'- -GAG--AGGCGC---UGGcUCAUGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 124259 | 0.67 | 0.789636 |
Target: 5'- uUCuUCCGCGGCCucGGGUACGUuuagagcGCCGg- -3' miRNA: 3'- gAG-AGGCGCUGG--CUCAUGCG-------UGGCga -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 49803 | 0.67 | 0.781588 |
Target: 5'- -cCUCCGCG-UCGAgGUGCaGgGCCGCg -3' miRNA: 3'- gaGAGGCGCuGGCU-CAUG-CgUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 78516 | 0.8 | 0.176499 |
Target: 5'- ---aCCGCG-CUGGGUACGCGCCGCUg -3' miRNA: 3'- gagaGGCGCuGGCUCAUGCGUGGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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