miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 5' -47.5 NC_005264.1 + 96265 0.66 0.999181
Target:  5'- -gAGCCUguacCAgcaGGUGGCGGCgg-AGCu -3'
miRNA:   3'- aaUUGGAa---GUa--UCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 136910 0.66 0.999473
Target:  5'- -gAGCCgcgUCGUGcaguGCAGCcGCUUcgUGGCg -3'
miRNA:   3'- aaUUGGa--AGUAU----CGUCGcCGAA--AUCG- -5'
24363 5' -47.5 NC_005264.1 + 39085 0.66 0.999582
Target:  5'- --cGCCggcUCGgcgGGCAGCGGCgucUGGa -3'
miRNA:   3'- aauUGGa--AGUa--UCGUCGCCGaa-AUCg -5'
24363 5' -47.5 NC_005264.1 + 48389 0.67 0.998487
Target:  5'- -aGACUggggCGUcgGGCGGCGGCcaggAGCg -3'
miRNA:   3'- aaUUGGaa--GUA--UCGUCGCCGaaa-UCG- -5'
24363 5' -47.5 NC_005264.1 + 145968 0.67 0.998165
Target:  5'- -cGACCUUCGccggcgcgaaUAcgaacugcGCGGCGGCU--GGCg -3'
miRNA:   3'- aaUUGGAAGU----------AU--------CGUCGCCGAaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 134841 0.67 0.998487
Target:  5'- -cGACCUggaUCGaugGGCcGCGGCUacGGCg -3'
miRNA:   3'- aaUUGGA---AGUa--UCGuCGCCGAaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 55542 0.67 0.998759
Target:  5'- -aAGCCUagGUAGCAGgugGGCUUcgUAGUu -3'
miRNA:   3'- aaUUGGAagUAUCGUCg--CCGAA--AUCG- -5'
24363 5' -47.5 NC_005264.1 + 97530 0.67 0.998989
Target:  5'- -cGGCUguggCGUGGCAGCgGGCaagAGCc -3'
miRNA:   3'- aaUUGGaa--GUAUCGUCG-CCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 16868 0.67 0.998989
Target:  5'- gUUGACCUUgucGGCGGCGGCa----- -3'
miRNA:   3'- -AAUUGGAAguaUCGUCGCCGaaaucg -5'
24363 5' -47.5 NC_005264.1 + 142213 0.67 0.998165
Target:  5'- gUAAUCUcgCGaGGCAGCGGUUgggucAGCa -3'
miRNA:   3'- aAUUGGAa-GUaUCGUCGCCGAaa---UCG- -5'
24363 5' -47.5 NC_005264.1 + 30399 0.67 0.998989
Target:  5'- -aGGCCUUgacgccggcgagCGUAGCGuuguacagccGCGGCUUgUAGCu -3'
miRNA:   3'- aaUUGGAA------------GUAUCGU----------CGCCGAA-AUCG- -5'
24363 5' -47.5 NC_005264.1 + 93579 0.67 0.998165
Target:  5'- --cGCCc-CAUGGCAGCGGaugaGGCg -3'
miRNA:   3'- aauUGGaaGUAUCGUCGCCgaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 9542 0.67 0.998989
Target:  5'- --uGCCUUUGUcgcucgcagccGGUGGCGGCU--AGCa -3'
miRNA:   3'- aauUGGAAGUA-----------UCGUCGCCGAaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 62593 0.67 0.998601
Target:  5'- aUUGACCgcgCGaAGUAGCGGCgcggacguuccgAGCa -3'
miRNA:   3'- -AAUUGGaa-GUaUCGUCGCCGaaa---------UCG- -5'
24363 5' -47.5 NC_005264.1 + 138591 0.67 0.998165
Target:  5'- gUUGACUUcCGcGGCAGCGGUgg-GGUg -3'
miRNA:   3'- -AAUUGGAaGUaUCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 3984 0.67 0.998487
Target:  5'- gUUAGCCgcuucGGCGGCGGCg--GGUu -3'
miRNA:   3'- -AAUUGGaaguaUCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 96448 0.67 0.998487
Target:  5'- -cAACCUUg--AGCcuAGCGGCUUccAGCg -3'
miRNA:   3'- aaUUGGAAguaUCG--UCGCCGAAa-UCG- -5'
24363 5' -47.5 NC_005264.1 + 124836 0.68 0.995573
Target:  5'- -cGGCgUUCaAUAGUccGGCGGCggUGGCc -3'
miRNA:   3'- aaUUGgAAG-UAUCG--UCGCCGaaAUCG- -5'
24363 5' -47.5 NC_005264.1 + 32682 0.68 0.997788
Target:  5'- -gAACUcUgGUGGCGGCcaGGCuUUUAGCg -3'
miRNA:   3'- aaUUGGaAgUAUCGUCG--CCG-AAAUCG- -5'
24363 5' -47.5 NC_005264.1 + 57471 0.68 0.996838
Target:  5'- --cGCCUguuuUCcUGGCGGCGGC---GGCg -3'
miRNA:   3'- aauUGGA----AGuAUCGUCGCCGaaaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.