miRNA display CGI


Results 21 - 40 of 256 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 3' -56.7 NC_005264.1 + 65510 0.66 0.89138
Target:  5'- cGGAGUGAUcgGCGACCugcuuggcACCGGgGCGCc- -3'
miRNA:   3'- -UUUCGCUG--UGCUGG--------UGGCUgCGCGuc -5'
24364 3' -56.7 NC_005264.1 + 105656 0.66 0.89138
Target:  5'- cGGGCGGCGCu-UUGCCGGCG-GCAGa -3'
miRNA:   3'- uUUCGCUGUGcuGGUGGCUGCgCGUC- -5'
24364 3' -56.7 NC_005264.1 + 68428 0.66 0.89138
Target:  5'- -cAGCGAuCGCGcaguccgcGCCGCgGucuGCGCGCGGa -3'
miRNA:   3'- uuUCGCU-GUGC--------UGGUGgC---UGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 37442 0.66 0.89138
Target:  5'- cGAGCGGCugG-UCGCCGAguucaUGCuGCAGc -3'
miRNA:   3'- uUUCGCUGugCuGGUGGCU-----GCG-CGUC- -5'
24364 3' -56.7 NC_005264.1 + 37559 0.66 0.89138
Target:  5'- -cGGCGGCgACGACCG-CGACGgagGCGGc -3'
miRNA:   3'- uuUCGCUG-UGCUGGUgGCUGCg--CGUC- -5'
24364 3' -56.7 NC_005264.1 + 86461 0.66 0.89138
Target:  5'- cGAGGCGaACACGugguuagcggguACCaacgcGCCuGCGCGCAGu -3'
miRNA:   3'- -UUUCGC-UGUGC------------UGG-----UGGcUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 43681 0.66 0.89138
Target:  5'- -cGGCGuuaAgGCGGCCGCCGGgGaGCGGg -3'
miRNA:   3'- uuUCGC---UgUGCUGGUGGCUgCgCGUC- -5'
24364 3' -56.7 NC_005264.1 + 123203 0.66 0.890712
Target:  5'- cGAGGCcGCGCGGCaaaaccacagCGCCGugucuaggagcaaGCGCGCAGc -3'
miRNA:   3'- -UUUCGcUGUGCUG----------GUGGC-------------UGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 106766 0.66 0.884599
Target:  5'- ----aGACGCGGCgucaGCgGGCGUGCAGa -3'
miRNA:   3'- uuucgCUGUGCUGg---UGgCUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 131233 0.66 0.884599
Target:  5'- cAGGGCGAUGCGcGCCGCCu-CGC-CAGa -3'
miRNA:   3'- -UUUCGCUGUGC-UGGUGGcuGCGcGUC- -5'
24364 3' -56.7 NC_005264.1 + 61915 0.66 0.884599
Target:  5'- uAGGCG-CACGggcGCCGCCGcuUGCGCGa -3'
miRNA:   3'- uUUCGCuGUGC---UGGUGGCu-GCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 128975 0.66 0.884599
Target:  5'- cGAGCGGacgcucCACGuucuucagcucuGCCG-CGGCGCGCAGg -3'
miRNA:   3'- uUUCGCU------GUGC------------UGGUgGCUGCGCGUC- -5'
24364 3' -56.7 NC_005264.1 + 17371 0.66 0.884599
Target:  5'- -cGGCGGCGCGGUCugUGuACGUGCGc -3'
miRNA:   3'- uuUCGCUGUGCUGGugGC-UGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 13953 0.66 0.884599
Target:  5'- -uAGCGcgagagauaaGCGCGGCCAaaGAUGCGUAc -3'
miRNA:   3'- uuUCGC----------UGUGCUGGUggCUGCGCGUc -5'
24364 3' -56.7 NC_005264.1 + 162224 0.66 0.884599
Target:  5'- --uGCGACGCGG--GCCGGCGgGgGGg -3'
miRNA:   3'- uuuCGCUGUGCUggUGGCUGCgCgUC- -5'
24364 3' -56.7 NC_005264.1 + 43197 0.66 0.884599
Target:  5'- --uGCGACGCGG--GCCGGCGgGgGGg -3'
miRNA:   3'- uuuCGCUGUGCUggUGGCUGCgCgUC- -5'
24364 3' -56.7 NC_005264.1 + 61417 0.66 0.884599
Target:  5'- uAAAGCGACA-----ACCGGCGCGCuGg -3'
miRNA:   3'- -UUUCGCUGUgcuggUGGCUGCGCGuC- -5'
24364 3' -56.7 NC_005264.1 + 12206 0.66 0.884599
Target:  5'- cAGGGCGAUGCGcGCCGCCu-CGC-CAGa -3'
miRNA:   3'- -UUUCGCUGUGC-UGGUGGcuGCGcGUC- -5'
24364 3' -56.7 NC_005264.1 + 162442 0.66 0.883908
Target:  5'- --cGCGAacagguaCACGACCgcGCCGGCGCuGCc- -3'
miRNA:   3'- uuuCGCU-------GUGCUGG--UGGCUGCG-CGuc -5'
24364 3' -56.7 NC_005264.1 + 108047 0.66 0.877596
Target:  5'- -cGGCGACuaugACGGCCugCccgguguucugGAUGCGCAa -3'
miRNA:   3'- uuUCGCUG----UGCUGGugG-----------CUGCGCGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.