Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24365 | 3' | -48.6 | NC_005264.1 | + | 3857 | 0.67 | 0.997202 |
Target: 5'- uCCUGCGCCGGgGAUUgggcugccccacgucUCcgUcuucGCGUCg -3' miRNA: 3'- uGGACGCGGUUgUUAA---------------AGuaA----CGCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 4679 | 0.68 | 0.991109 |
Target: 5'- uACCUGCGUCGggGCGAguggCGccGCGUCc -3' miRNA: 3'- -UGGACGCGGU--UGUUaaa-GUaaCGCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 8313 | 0.67 | 0.997896 |
Target: 5'- cACCUGCGCCG-CGGcgUCGccGuCGUCc -3' miRNA: 3'- -UGGACGCGGUuGUUaaAGUaaC-GCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 9484 | 0.72 | 0.942493 |
Target: 5'- gACCUcGCGUCAGCGAg-UCAgccaGCGUCa -3' miRNA: 3'- -UGGA-CGCGGUUGUUaaAGUaa--CGCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 12459 | 0.68 | 0.993334 |
Target: 5'- gGCCcggcagGCGUCAGCGAgUUC-UUGCGUg -3' miRNA: 3'- -UGGa-----CGCGGUUGUUaAAGuAACGCAg -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 17388 | 0.77 | 0.733715 |
Target: 5'- uACgUGCGCCGuuCGGUcUCAUUGUGUCg -3' miRNA: 3'- -UGgACGCGGUu-GUUAaAGUAACGCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 30400 | 0.68 | 0.993334 |
Target: 5'- gGCCuUGaCGCCGGCGAg--CGUaGCGUUg -3' miRNA: 3'- -UGG-AC-GCGGUUGUUaaaGUAaCGCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 33354 | 0.66 | 0.99903 |
Target: 5'- cCCUGCGCCGccGCAAUcUCGa---GUCg -3' miRNA: 3'- uGGACGCGGU--UGUUAaAGUaacgCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 35153 | 0.67 | 0.997655 |
Target: 5'- gGCCUG-GCCGcggugugucugguggGCAAggUUCGggGCGUCc -3' miRNA: 3'- -UGGACgCGGU---------------UGUUa-AAGUaaCGCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 35655 | 0.75 | 0.839942 |
Target: 5'- uACCUGCGCUucgcgcACGAUggUCGUUGCGg- -3' miRNA: 3'- -UGGACGCGGu-----UGUUAa-AGUAACGCag -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 52942 | 0.67 | 0.995813 |
Target: 5'- gGCC-GCGCCcGCGGcg-CAUUGCGcCg -3' miRNA: 3'- -UGGaCGCGGuUGUUaaaGUAACGCaG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 62710 | 0.66 | 0.99903 |
Target: 5'- uACCUGCGUaucggccgCGACGAUUcccgCAaccGCGUCg -3' miRNA: 3'- -UGGACGCG--------GUUGUUAAa---GUaa-CGCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 64180 | 0.69 | 0.989797 |
Target: 5'- aGCUaGCGCCGACAccgUUCGUcUGaCGUCc -3' miRNA: 3'- -UGGaCGCGGUUGUua-AAGUA-AC-GCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 66805 | 0.69 | 0.984938 |
Target: 5'- cGCCUGgGCCAGCGGcgUCuauaguuacUGCGUUc -3' miRNA: 3'- -UGGACgCGGUUGUUaaAGua-------ACGCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 78275 | 0.67 | 0.997896 |
Target: 5'- uGCCgucGCuCCGACAAgcgggcugUUCuUUGCGUCg -3' miRNA: 3'- -UGGa--CGcGGUUGUUa-------AAGuAACGCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 79751 | 0.68 | 0.995088 |
Target: 5'- cACCUGCGCU-ACGuugUUCcgUcGUGUCa -3' miRNA: 3'- -UGGACGCGGuUGUua-AAGuaA-CGCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 86493 | 0.71 | 0.957494 |
Target: 5'- cGCCUGCGC--GCAGUcgccgcgcggccaacUUUcgUGCGUCg -3' miRNA: 3'- -UGGACGCGguUGUUA---------------AAGuaACGCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 88082 | 0.66 | 0.99903 |
Target: 5'- -aUUGCGCCaAGCAGUgcgcgUCGggcacaGCGUCg -3' miRNA: 3'- ugGACGCGG-UUGUUAa----AGUaa----CGCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 89085 | 0.76 | 0.812989 |
Target: 5'- cUCUGCGCCAGCGAUaaggccUUAUUcGCGUCu -3' miRNA: 3'- uGGACGCGGUUGUUAa-----AGUAA-CGCAG- -5' |
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24365 | 3' | -48.6 | NC_005264.1 | + | 90877 | 0.67 | 0.996448 |
Target: 5'- uUCUGUGCCGGCAAauagCAUUaccgGCGUUg -3' miRNA: 3'- uGGACGCGGUUGUUaaa-GUAA----CGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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