miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24365 3' -48.6 NC_005264.1 + 30400 0.68 0.993334
Target:  5'- gGCCuUGaCGCCGGCGAg--CGUaGCGUUg -3'
miRNA:   3'- -UGG-AC-GCGGUUGUUaaaGUAaCGCAG- -5'
24365 3' -48.6 NC_005264.1 + 123706 0.68 0.991109
Target:  5'- uACCUGCGUCGggGCGAguggCGccGCGUCc -3'
miRNA:   3'- -UGGACGCGGU--UGUUaaa-GUaaCGCAG- -5'
24365 3' -48.6 NC_005264.1 + 4679 0.68 0.991109
Target:  5'- uACCUGCGUCGggGCGAguggCGccGCGUCc -3'
miRNA:   3'- -UGGACGCGGU--UGUUaaa-GUaaCGCAG- -5'
24365 3' -48.6 NC_005264.1 + 64180 0.69 0.989797
Target:  5'- aGCUaGCGCCGACAccgUUCGUcUGaCGUCc -3'
miRNA:   3'- -UGGaCGCGGUUGUua-AAGUA-AC-GCAG- -5'
24365 3' -48.6 NC_005264.1 + 126037 0.69 0.988337
Target:  5'- cGCCUGCGCCGcagagACAAcuaagUCGUUGUa-- -3'
miRNA:   3'- -UGGACGCGGU-----UGUUaa---AGUAACGcag -5'
24365 3' -48.6 NC_005264.1 + 107697 0.69 0.98771
Target:  5'- uACgCUGCGCCAGCAcagcgcacggCGggGUGUCg -3'
miRNA:   3'- -UG-GACGCGGUUGUuaaa------GUaaCGCAG- -5'
24365 3' -48.6 NC_005264.1 + 103743 0.69 0.986721
Target:  5'- aACCaGCGCCAacgACAGUUUCAgucUGCu-- -3'
miRNA:   3'- -UGGaCGCGGU---UGUUAAAGUa--ACGcag -5'
24365 3' -48.6 NC_005264.1 + 66805 0.69 0.984938
Target:  5'- cGCCUGgGCCAGCGGcgUCuauaguuacUGCGUUc -3'
miRNA:   3'- -UGGACgCGGUUGUUaaAGua-------ACGCAG- -5'
24365 3' -48.6 NC_005264.1 + 144436 0.7 0.970195
Target:  5'- cGCCUGCGCCGgccggaACGGUggUCGUUGUc-- -3'
miRNA:   3'- -UGGACGCGGU------UGUUAa-AGUAACGcag -5'
24365 3' -48.6 NC_005264.1 + 86493 0.71 0.957494
Target:  5'- cGCCUGCGC--GCAGUcgccgcgcggccaacUUUcgUGCGUCg -3'
miRNA:   3'- -UGGACGCGguUGUUA---------------AAGuaACGCAG- -5'
24365 3' -48.6 NC_005264.1 + 9484 0.72 0.942493
Target:  5'- gACCUcGCGUCAGCGAg-UCAgccaGCGUCa -3'
miRNA:   3'- -UGGA-CGCGGUUGUUaaAGUaa--CGCAG- -5'
24365 3' -48.6 NC_005264.1 + 128511 0.72 0.942493
Target:  5'- gACCUcGCGUCAGCGAg-UCAgccaGCGUCa -3'
miRNA:   3'- -UGGA-CGCGGUUGUUaaAGUaa--CGCAG- -5'
24365 3' -48.6 NC_005264.1 + 130973 0.73 0.917292
Target:  5'- gGCgUGCGCCGACcgcgaggcgcuggaaGAUUUCAggGgGUCg -3'
miRNA:   3'- -UGgACGCGGUUG---------------UUAAAGUaaCgCAG- -5'
24365 3' -48.6 NC_005264.1 + 35655 0.75 0.839942
Target:  5'- uACCUGCGCUucgcgcACGAUggUCGUUGCGg- -3'
miRNA:   3'- -UGGACGCGGu-----UGUUAa-AGUAACGCag -5'
24365 3' -48.6 NC_005264.1 + 89085 0.76 0.812989
Target:  5'- cUCUGCGCCAGCGAUaaggccUUAUUcGCGUCu -3'
miRNA:   3'- uGGACGCGGUUGUUAa-----AGUAA-CGCAG- -5'
24365 3' -48.6 NC_005264.1 + 17388 0.77 0.733715
Target:  5'- uACgUGCGCCGuuCGGUcUCAUUGUGUCg -3'
miRNA:   3'- -UGgACGCGGUu-GUUAaAGUAACGCAG- -5'
24365 3' -48.6 NC_005264.1 + 134575 1.1 0.011226
Target:  5'- gACCUGCGCCAACAAUUUCAUUGCGUCu -3'
miRNA:   3'- -UGGACGCGGUUGUUAAAGUAACGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.