miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24367 5' -52.7 NC_005264.1 + 104150 0.66 0.96661
Target:  5'- -cGCGGCcgUCauaGAGGC-CGGGUGCGc -3'
miRNA:   3'- uuCGUCGa-AGa--CUUUGuGCCCACGUu -5'
24367 5' -52.7 NC_005264.1 + 64259 0.66 0.965259
Target:  5'- cAGCAGCcuaucggugaggCUGGcuACGCGGGUGCc- -3'
miRNA:   3'- uUCGUCGaa----------GACUu-UGUGCCCACGuu -5'
24367 5' -52.7 NC_005264.1 + 48870 0.66 0.963163
Target:  5'- -cGUcGCUUCUGAcGCGcCGGGUGgAAc -3'
miRNA:   3'- uuCGuCGAAGACUuUGU-GCCCACgUU- -5'
24367 5' -52.7 NC_005264.1 + 105352 0.66 0.963163
Target:  5'- cGGGCGGCUgCU---GCACGaGGUGCGc -3'
miRNA:   3'- -UUCGUCGAaGAcuuUGUGC-CCACGUu -5'
24367 5' -52.7 NC_005264.1 + 19901 0.66 0.959476
Target:  5'- -cGCGGCg---GAAA-ACGGGUGCGAa -3'
miRNA:   3'- uuCGUCGaagaCUUUgUGCCCACGUU- -5'
24367 5' -52.7 NC_005264.1 + 22308 0.66 0.959476
Target:  5'- uAGGaUAGCUguagUCUGgcGCGCGGG-GCAAu -3'
miRNA:   3'- -UUC-GUCGA----AGACuuUGUGCCCaCGUU- -5'
24367 5' -52.7 NC_005264.1 + 114812 0.66 0.951357
Target:  5'- -cGaCAGCUUCUGgcACACGuGUGCc- -3'
miRNA:   3'- uuC-GUCGAAGACuuUGUGCcCACGuu -5'
24367 5' -52.7 NC_005264.1 + 122409 0.66 0.946916
Target:  5'- cGGCgagGGCUUCUccGGAACGCGGGgucggUGCGc -3'
miRNA:   3'- uUCG---UCGAAGA--CUUUGUGCCC-----ACGUu -5'
24367 5' -52.7 NC_005264.1 + 3382 0.66 0.946916
Target:  5'- cGGCgagGGCUUCUccGGAACGCGGGgucggUGCGc -3'
miRNA:   3'- uUCG---UCGAAGA--CUUUGUGCCC-----ACGUu -5'
24367 5' -52.7 NC_005264.1 + 136071 0.67 0.942216
Target:  5'- uAAGCGGaCUaauugggCUGggGCugGGGgGCAAc -3'
miRNA:   3'- -UUCGUC-GAa------GACuuUGugCCCaCGUU- -5'
24367 5' -52.7 NC_005264.1 + 106447 0.68 0.901922
Target:  5'- cGAGCGGCUUCgGAGGCGCGcuGGUuCGGa -3'
miRNA:   3'- -UUCGUCGAAGaCUUUGUGC--CCAcGUU- -5'
24367 5' -52.7 NC_005264.1 + 142788 0.69 0.873183
Target:  5'- -cGCGGacagguaUCUGGAcgugacgcuGCACGGGUGCGAg -3'
miRNA:   3'- uuCGUCga-----AGACUU---------UGUGCCCACGUU- -5'
24367 5' -52.7 NC_005264.1 + 125856 0.69 0.873183
Target:  5'- aGGGCuGCUgagUCUGAAAgGCGGGUugguGCAu -3'
miRNA:   3'- -UUCGuCGA---AGACUUUgUGCCCA----CGUu -5'
24367 5' -52.7 NC_005264.1 + 114660 0.69 0.857354
Target:  5'- -cGUAGCgucuccaUGAAGCGgGGGUGCAGc -3'
miRNA:   3'- uuCGUCGaag----ACUUUGUgCCCACGUU- -5'
24367 5' -52.7 NC_005264.1 + 60850 0.7 0.840621
Target:  5'- aAAGCAGCUucggcggagaUCUGAugGGCACGGGaUGaCAc -3'
miRNA:   3'- -UUCGUCGA----------AGACU--UUGUGCCC-AC-GUu -5'
24367 5' -52.7 NC_005264.1 + 55938 0.74 0.607644
Target:  5'- --cCGGCUUCUGGAAC-UGGGUGCGc -3'
miRNA:   3'- uucGUCGAAGACUUUGuGCCCACGUu -5'
24367 5' -52.7 NC_005264.1 + 132521 1.03 0.009602
Target:  5'- cAAGCAGCUUCUGAAACACGGGUGCAAc -3'
miRNA:   3'- -UUCGUCGAAGACUUUGUGCCCACGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.