miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24369 5' -49.8 NC_005264.1 + 129943 1.12 0.007563
Target:  5'- gAUCGAGAACGCAUAUACAGUCUGGGCg -3'
miRNA:   3'- -UAGCUCUUGCGUAUAUGUCAGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 45776 0.74 0.845351
Target:  5'- -gCGAuGGGCGCcgGagcggcuauUGCGGUCUGGGCc -3'
miRNA:   3'- uaGCU-CUUGCGuaU---------AUGUCAGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 22220 0.73 0.877205
Target:  5'- aGUgGAGucguCGCcucGUcgGCGGUCUGGGCg -3'
miRNA:   3'- -UAgCUCuu--GCG---UAuaUGUCAGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 134079 0.72 0.898605
Target:  5'- cAUUuAGAGCGCAgcuagaGCAcGUCUGGGCg -3'
miRNA:   3'- -UAGcUCUUGCGUaua---UGU-CAGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 69622 0.71 0.929174
Target:  5'- -gUGAGAACGaCAggcUAUugGGgCUGGGCa -3'
miRNA:   3'- uaGCUCUUGC-GU---AUAugUCaGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 80108 0.71 0.929174
Target:  5'- uAUCGAGGugGCGcuaGCGGUCcgcaagGGGCc -3'
miRNA:   3'- -UAGCUCUugCGUauaUGUCAGa-----CCCG- -5'
24369 5' -49.8 NC_005264.1 + 85444 0.71 0.939574
Target:  5'- --aGGGAGCGCu--UGCcggcGUCUGGGCc -3'
miRNA:   3'- uagCUCUUGCGuauAUGu---CAGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 134385 0.7 0.953233
Target:  5'- uUCGGGGACGCAUugaGCAGUUcacGGCc -3'
miRNA:   3'- uAGCUCUUGCGUAua-UGUCAGac-CCG- -5'
24369 5' -49.8 NC_005264.1 + 126233 0.7 0.954882
Target:  5'- gAUCGGGAGCGCucaaggcguaucuuUAUACcaucCUGGGCg -3'
miRNA:   3'- -UAGCUCUUGCGu-------------AUAUGuca-GACCCG- -5'
24369 5' -49.8 NC_005264.1 + 126777 0.69 0.971065
Target:  5'- -aCGGGcucucCGCGUcgGCAGUC-GGGCa -3'
miRNA:   3'- uaGCUCuu---GCGUAuaUGUCAGaCCCG- -5'
24369 5' -49.8 NC_005264.1 + 7751 0.69 0.971065
Target:  5'- -aCGGGcucucCGCGUcgGCAGUC-GGGCa -3'
miRNA:   3'- uaGCUCuu---GCGUAuaUGUCAGaCCCG- -5'
24369 5' -49.8 NC_005264.1 + 20840 0.69 0.973941
Target:  5'- -gCGAGAugcCGUAUuccACAGUCUGGaGCc -3'
miRNA:   3'- uaGCUCUu--GCGUAua-UGUCAGACC-CG- -5'
24369 5' -49.8 NC_005264.1 + 9965 0.69 0.973941
Target:  5'- cGUUGAGAGCaCGUAUgGCAGagUGGGUu -3'
miRNA:   3'- -UAGCUCUUGcGUAUA-UGUCagACCCG- -5'
24369 5' -49.8 NC_005264.1 + 27494 0.68 0.983396
Target:  5'- -aCGAGAauacuagagGCGCAgugGCGGgCUGGGUc -3'
miRNA:   3'- uaGCUCU---------UGCGUauaUGUCaGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 55152 0.68 0.98529
Target:  5'- -gUGcuGGCGCAgcgUAUGCGGccUCUGGGCg -3'
miRNA:   3'- uaGCucUUGCGU---AUAUGUC--AGACCCG- -5'
24369 5' -49.8 NC_005264.1 + 156160 0.68 0.987014
Target:  5'- -aCGaAGGGCGCAUAUgcGCGGcUUUGcGGCg -3'
miRNA:   3'- uaGC-UCUUGCGUAUA--UGUC-AGAC-CCG- -5'
24369 5' -49.8 NC_005264.1 + 25724 0.68 0.987014
Target:  5'- uUCGAGAcCGCGUAc-CAGUUaGGGUc -3'
miRNA:   3'- uAGCUCUuGCGUAUauGUCAGaCCCG- -5'
24369 5' -49.8 NC_005264.1 + 45171 0.68 0.988579
Target:  5'- --gGAGAGCGCGgcagcgaACGGUCUGG-Ca -3'
miRNA:   3'- uagCUCUUGCGUaua----UGUCAGACCcG- -5'
24369 5' -49.8 NC_005264.1 + 43980 0.68 0.989993
Target:  5'- -aUGAGGACGCAgaacgcgagGCGGaCUuGGGCa -3'
miRNA:   3'- uaGCUCUUGCGUaua------UGUCaGA-CCCG- -5'
24369 5' -49.8 NC_005264.1 + 1646 0.67 0.991266
Target:  5'- uAUCGGG---GCAUAUAgGGUacaUGGGCg -3'
miRNA:   3'- -UAGCUCuugCGUAUAUgUCAg--ACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.