miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 5' -62.8 NC_005264.1 + 28339 0.66 0.642803
Target:  5'- gCGGCGUAcGGGUagcgGGCGacacGCGCaauuGGAGu -3'
miRNA:   3'- -GCCGCGU-CCCAaa--CCGC----CGCGg---CCUC- -5'
24370 5' -62.8 NC_005264.1 + 25714 0.66 0.623349
Target:  5'- uGGCGCGGGcGgca-GCGGUGCguacucggucgCGGAGa -3'
miRNA:   3'- gCCGCGUCC-CaaacCGCCGCG-----------GCCUC- -5'
24370 5' -62.8 NC_005264.1 + 25212 0.66 0.603918
Target:  5'- uGGCGCAcacGGUggccagGGCaGUGCCGGcAGa -3'
miRNA:   3'- gCCGCGUc--CCAaa----CCGcCGCGGCC-UC- -5'
24370 5' -62.8 NC_005264.1 + 21323 0.68 0.508815
Target:  5'- gGGUGCAGuug-UGGCGcccguagauGCGCCGGGGc -3'
miRNA:   3'- gCCGCGUCccaaACCGC---------CGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 20247 0.67 0.535874
Target:  5'- gGGUggGCAGGGguu-GCGGCGCggccucgCGGAGg -3'
miRNA:   3'- gCCG--CGUCCCaaacCGCCGCG-------GCCUC- -5'
24370 5' -62.8 NC_005264.1 + 19887 0.66 0.603918
Target:  5'- gCGGcCGCGcuagccauuucGGGUgcuuugUGGUGGCGCCGu-- -3'
miRNA:   3'- -GCC-GCGU-----------CCCAa-----ACCGCCGCGGCcuc -5'
24370 5' -62.8 NC_005264.1 + 19425 0.72 0.320894
Target:  5'- aGGCGCcGGGUgUGGCcgcggGGCGCgGGuGg -3'
miRNA:   3'- gCCGCGuCCCAaACCG-----CCGCGgCCuC- -5'
24370 5' -62.8 NC_005264.1 + 16560 0.73 0.256999
Target:  5'- -aGCGCGGug---GGCGGCGCCGGGGc -3'
miRNA:   3'- gcCGCGUCccaaaCCGCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 7872 0.67 0.565333
Target:  5'- gCGGCGUcGGcGccccagauGCGGCGUCGGAGg -3'
miRNA:   3'- -GCCGCGuCC-Caaac----CGCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 6987 0.81 0.080907
Target:  5'- uGGCGCGGGGUUgucccugcgGGCGGCGCCaacgugaaaguuauuGGGGu -3'
miRNA:   3'- gCCGCGUCCCAAa--------CCGCCGCGG---------------CCUC- -5'
24370 5' -62.8 NC_005264.1 + 5954 0.66 0.642803
Target:  5'- -cGCGCAGGGca--GCGGCGCauucgCGGAu -3'
miRNA:   3'- gcCGCGUCCCaaacCGCCGCG-----GCCUc -5'
24370 5' -62.8 NC_005264.1 + 3622 0.69 0.445249
Target:  5'- gGGCGCugugggcggggugGGGGUUUcugggaGGCGGUuugaGCUGGGGg -3'
miRNA:   3'- gCCGCG-------------UCCCAAA------CCGCCG----CGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 2892 0.67 0.546271
Target:  5'- gCGGCGCGGcGGggagGGCgacGGCGagagcgaCGGAGu -3'
miRNA:   3'- -GCCGCGUC-CCaaa-CCG---CCGCg------GCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.