miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 5' -62.8 NC_005264.1 + 43881 0.71 0.349591
Target:  5'- aCGaGCGCGGcaaa-GGgGGCGCCGGAGa -3'
miRNA:   3'- -GC-CGCGUCccaaaCCgCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 45392 0.66 0.652522
Target:  5'- aGGCGCGGcaaacgauGGag-GGCGGCGCCc--- -3'
miRNA:   3'- gCCGCGUC--------CCaaaCCGCCGCGGccuc -5'
24370 5' -62.8 NC_005264.1 + 48376 0.71 0.36461
Target:  5'- gGGCGCAgccgguagacuGGGgcgucgGGCGGCgGCCaGGAGc -3'
miRNA:   3'- gCCGCGU-----------CCCaaa---CCGCCG-CGG-CCUC- -5'
24370 5' -62.8 NC_005264.1 + 54211 0.67 0.565333
Target:  5'- -uGCGCGGGGgauacGGaCGGCGgCCGGuGc -3'
miRNA:   3'- gcCGCGUCCCaaa--CC-GCCGC-GGCCuC- -5'
24370 5' -62.8 NC_005264.1 + 55178 0.66 0.652522
Target:  5'- gGGCGCGGcugaaGGCGGCGaCCGcGAa -3'
miRNA:   3'- gCCGCGUCccaaaCCGCCGC-GGC-CUc -5'
24370 5' -62.8 NC_005264.1 + 66690 0.7 0.387962
Target:  5'- cCGGCGCcGGGcg-GGgGGCguacuacgugucGCCGGGGa -3'
miRNA:   3'- -GCCGCGuCCCaaaCCgCCG------------CGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 67634 0.67 0.594229
Target:  5'- gGGCGCAGGGguguccUGcGCGGC-CCGu-- -3'
miRNA:   3'- gCCGCGUCCCaa----AC-CGCCGcGGCcuc -5'
24370 5' -62.8 NC_005264.1 + 75706 0.69 0.463604
Target:  5'- uCGGCGCGaagacuGGUgcgccccGCgGGCGCCGGAGg -3'
miRNA:   3'- -GCCGCGUc-----CCAaac----CG-CCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 79213 0.66 0.642803
Target:  5'- uGGgGCuAGGcugcGUgcaGGCGGCGgCGGGGg -3'
miRNA:   3'- gCCgCG-UCC----CAaa-CCGCCGCgGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 82389 0.74 0.233971
Target:  5'- gGGCGCAGGGcuagacgUUUGGauGC-CCGGAGa -3'
miRNA:   3'- gCCGCGUCCC-------AAACCgcCGcGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 87653 0.69 0.437508
Target:  5'- gGGCGCGGGaccUGGCGGCaaCGGGc -3'
miRNA:   3'- gCCGCGUCCcaaACCGCCGcgGCCUc -5'
24370 5' -62.8 NC_005264.1 + 91496 0.66 0.652522
Target:  5'- -cGCuGCGGGGUUUcGGCGGCGUa-GAa -3'
miRNA:   3'- gcCG-CGUCCCAAA-CCGCCGCGgcCUc -5'
24370 5' -62.8 NC_005264.1 + 94601 0.7 0.380069
Target:  5'- gCGGCGCGGGcauggcUUGGCGGUGCggcgUGGAc -3'
miRNA:   3'- -GCCGCGUCCca----AACCGCCGCG----GCCUc -5'
24370 5' -62.8 NC_005264.1 + 101930 0.66 0.623349
Target:  5'- uGGCGCGcgaaacUGGCGGCGUCGGc- -3'
miRNA:   3'- gCCGCGUcccaa-ACCGCCGCGGCCuc -5'
24370 5' -62.8 NC_005264.1 + 109088 0.66 0.652522
Target:  5'- uGGCGaAGacga-GGaCGGCGCCGGAGa -3'
miRNA:   3'- gCCGCgUCccaaaCC-GCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 109350 0.66 0.633076
Target:  5'- cCGGCGCAuGGGgcuucuaUGGUGGgggaguucggcCGUCGGAa -3'
miRNA:   3'- -GCCGCGU-CCCaa-----ACCGCC-----------GCGGCCUc -5'
24370 5' -62.8 NC_005264.1 + 109637 0.67 0.584564
Target:  5'- gGGCGCGacGGUUgcaacucGCGGCcCCGGAGa -3'
miRNA:   3'- gCCGCGUc-CCAAac-----CGCCGcGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 115948 0.66 0.614599
Target:  5'- gCGGCGCAGGcuaggagguacGCGGCGCCcGAc -3'
miRNA:   3'- -GCCGCGUCCcaaac------CGCCGCGGcCUc -5'
24370 5' -62.8 NC_005264.1 + 116527 0.68 0.527419
Target:  5'- gCGGUcuucgGUGGGGUcgUUGGgGGCuaCGGAGg -3'
miRNA:   3'- -GCCG-----CGUCCCA--AACCgCCGcgGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 120051 0.69 0.454814
Target:  5'- gGGUcuaGCGGGGgggaaguaggUGGCGGaCGCCGGc- -3'
miRNA:   3'- gCCG---CGUCCCaa--------ACCGCC-GCGGCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.