Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24371 | 3' | -51.6 | NC_005264.1 | + | 116447 | 0.7 | 0.932069 |
Target: 5'- cGCGggGGCgACGAUCgGGgCGGUUGa- -3' miRNA: 3'- -CGCaaUCGgUGCUAG-UCgGCCAAUgg -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 32396 | 0.69 | 0.958689 |
Target: 5'- gGCGUccGCCGCGAcuuUguGCUGGaacGCCa -3' miRNA: 3'- -CGCAauCGGUGCU---AguCGGCCaa-UGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 30210 | 0.69 | 0.958689 |
Target: 5'- cGCGUcccGaCCGCGAUC-GCCGGUc-CCg -3' miRNA: 3'- -CGCAau-C-GGUGCUAGuCGGCCAauGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 37429 | 0.69 | 0.958689 |
Target: 5'- cCGUggAGCagCACGAgCGGCUGGUcGCCg -3' miRNA: 3'- cGCAa-UCG--GUGCUaGUCGGCCAaUGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 91895 | 0.69 | 0.95485 |
Target: 5'- -gGUUGGCCGCGG-CAGCgaugggcgggcgCGGcgACCa -3' miRNA: 3'- cgCAAUCGGUGCUaGUCG------------GCCaaUGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 50494 | 0.69 | 0.958689 |
Target: 5'- aCG-UGGCCACGGccgCGGCCaGUucUGCCu -3' miRNA: 3'- cGCaAUCGGUGCUa--GUCGGcCA--AUGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 151423 | 0.69 | 0.958689 |
Target: 5'- gGCGUccGCCGCGAcuuUguGCUGGaacGCCa -3' miRNA: 3'- -CGCAauCGGUGCU---AguCGGCCaa-UGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 149237 | 0.69 | 0.958689 |
Target: 5'- cGCGUcccGaCCGCGAUC-GCCGGUc-CCg -3' miRNA: 3'- -CGCAau-C-GGUGCUAGuCGGCCAauGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 43662 | 0.69 | 0.962298 |
Target: 5'- gGCGUUGGCCGCuGAaccguUCuuugguGCCGGcgGCa -3' miRNA: 3'- -CGCAAUCGGUG-CU-----AGu-----CGGCCaaUGg -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 156456 | 0.69 | 0.958689 |
Target: 5'- cCGUggAGCagCACGAgCGGCUGGUcGCCg -3' miRNA: 3'- cGCAa-UCG--GUGCUaGUCGGCCAaUGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 143648 | 0.68 | 0.97454 |
Target: 5'- uCGUggGGCCgACGGUCGGCCccGgaGCCa -3' miRNA: 3'- cGCAa-UCGG-UGCUAGUCGGc-CaaUGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 40019 | 0.68 | 0.968845 |
Target: 5'- cGCGgaccGCCACgcaGAUCGGCggCGGUcgACCa -3' miRNA: 3'- -CGCaau-CGGUG---CUAGUCG--GCCAa-UGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 81889 | 0.68 | 0.971796 |
Target: 5'- gGCGccUUGGCgGCGAUgGGCgGGcgaGCCa -3' miRNA: 3'- -CGC--AAUCGgUGCUAgUCGgCCaa-UGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 25207 | 0.68 | 0.971796 |
Target: 5'- cGUGUUGGCgcaCACGGU-GGCCaGGgcagUGCCg -3' miRNA: 3'- -CGCAAUCG---GUGCUAgUCGG-CCa---AUGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 159046 | 0.68 | 0.968845 |
Target: 5'- cGCGgaccGCCACgcaGAUCGGCggCGGUcgACCa -3' miRNA: 3'- -CGCaau-CGGUG---CUAGUCG--GCCAa-UGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 123259 | 0.68 | 0.979437 |
Target: 5'- gGCGgc-GCCACgcgaagguaGAUCAGucCCGGcUUGCCg -3' miRNA: 3'- -CGCaauCGGUG---------CUAGUC--GGCC-AAUGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 134732 | 0.68 | 0.977085 |
Target: 5'- ---aUAGCCACGAUaggcGCCGG-UGCg -3' miRNA: 3'- cgcaAUCGGUGCUAgu--CGGCCaAUGg -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 21356 | 0.68 | 0.977085 |
Target: 5'- uCGUcccgGGCCGCc-UCGGCCGGUggaaagagGCCc -3' miRNA: 3'- cGCAa---UCGGUGcuAGUCGGCCAa-------UGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 107898 | 0.68 | 0.977085 |
Target: 5'- aGCGUguucaggAGCCACucgCAGCCGuucGCCa -3' miRNA: 3'- -CGCAa------UCGGUGcuaGUCGGCcaaUGG- -5' |
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24371 | 3' | -51.6 | NC_005264.1 | + | 142678 | 0.68 | 0.97454 |
Target: 5'- aCGUcguGCCGCGAUCuugggcGCCGGcgGCg -3' miRNA: 3'- cGCAau-CGGUGCUAGu-----CGGCCaaUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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