miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 3' -51.6 NC_005264.1 + 65745 0.66 0.990856
Target:  5'- uGUG-UGGuCCGCcGUCGGCCGGcgcacccuuauauuUUACCu -3'
miRNA:   3'- -CGCaAUC-GGUGcUAGUCGGCC--------------AAUGG- -5'
24371 3' -51.6 NC_005264.1 + 117017 0.66 0.989975
Target:  5'- cGCGgcgcaugacgAGUacagCGCGAUCAGCgCGGcgGCCc -3'
miRNA:   3'- -CGCaa--------UCG----GUGCUAGUCG-GCCaaUGG- -5'
24371 3' -51.6 NC_005264.1 + 69765 0.66 0.989975
Target:  5'- gGCccu-GCCACGAauUCGGgCGGagGCCg -3'
miRNA:   3'- -CGcaauCGGUGCU--AGUCgGCCaaUGG- -5'
24371 3' -51.6 NC_005264.1 + 97612 0.66 0.989975
Target:  5'- cGCGgcGGCUACGGcucaguauucUaCAGCCGcagagcaaacGUUGCCg -3'
miRNA:   3'- -CGCaaUCGGUGCU----------A-GUCGGC----------CAAUGG- -5'
24371 3' -51.6 NC_005264.1 + 50290 0.66 0.989975
Target:  5'- uGCGUagcGGCUAacaGGUCGGC-GGUUACg -3'
miRNA:   3'- -CGCAa--UCGGUg--CUAGUCGgCCAAUGg -5'
24371 3' -51.6 NC_005264.1 + 99539 0.66 0.989975
Target:  5'- gGCGggAGuCCGC-AUCccccgacuggGGCCGGUUGuCCu -3'
miRNA:   3'- -CGCaaUC-GGUGcUAG----------UCGGCCAAU-GG- -5'
24371 3' -51.6 NC_005264.1 + 74284 0.66 0.989305
Target:  5'- uCGUUcGCCGCGAUCucguaccugcggcGCCacaguaucuuccaGGUUACCu -3'
miRNA:   3'- cGCAAuCGGUGCUAGu------------CGG-------------CCAAUGG- -5'
24371 3' -51.6 NC_005264.1 + 127347 0.67 0.987087
Target:  5'- aGCGauaccaAGCCgucGCGAUCGGCCGcGgcACUc -3'
miRNA:   3'- -CGCaa----UCGG---UGCUAGUCGGC-CaaUGG- -5'
24371 3' -51.6 NC_005264.1 + 75754 0.67 0.986927
Target:  5'- uGCGUUAcCCGCGAggcugugUGGCUGGUUcucguucgcgcucGCCu -3'
miRNA:   3'- -CGCAAUcGGUGCUa------GUCGGCCAA-------------UGG- -5'
24371 3' -51.6 NC_005264.1 + 144620 0.67 0.986927
Target:  5'- cGCGUcacuagcUAGCCGCucguGUCAGguaaaaCCGGUUaGCCg -3'
miRNA:   3'- -CGCA-------AUCGGUGc---UAGUC------GGCCAA-UGG- -5'
24371 3' -51.6 NC_005264.1 + 145813 0.67 0.985422
Target:  5'- cGCGcugcUGGCgACGAUC-GCCGccuUUGCCg -3'
miRNA:   3'- -CGCa---AUCGgUGCUAGuCGGCc--AAUGG- -5'
24371 3' -51.6 NC_005264.1 + 127963 0.67 0.985422
Target:  5'- gGCGgcGGCCugGAa---CCGGUUaGCCa -3'
miRNA:   3'- -CGCaaUCGGugCUagucGGCCAA-UGG- -5'
24371 3' -51.6 NC_005264.1 + 4703 0.67 0.985422
Target:  5'- cGCGU---CCACGAcagCAGCUGGUccagacgccgcUGCCc -3'
miRNA:   3'- -CGCAaucGGUGCUa--GUCGGCCA-----------AUGG- -5'
24371 3' -51.6 NC_005264.1 + 155484 0.67 0.985422
Target:  5'- cGCGgcGGCCGCcaGAUUuuGCCGG-UGCg -3'
miRNA:   3'- -CGCaaUCGGUG--CUAGu-CGGCCaAUGg -5'
24371 3' -51.6 NC_005264.1 + 126273 0.67 0.983598
Target:  5'- cGUGUUGGuCCGCGGaggCGGCCa--UGCCg -3'
miRNA:   3'- -CGCAAUC-GGUGCUa--GUCGGccaAUGG- -5'
24371 3' -51.6 NC_005264.1 + 24180 0.67 0.981605
Target:  5'- ----cGGCCGCGGUCGGUaaagucuggcgCGGU-GCCg -3'
miRNA:   3'- cgcaaUCGGUGCUAGUCG-----------GCCAaUGG- -5'
24371 3' -51.6 NC_005264.1 + 144831 0.67 0.981605
Target:  5'- cGCGgccgacccGCCGCcGUCagAGCCGGU-GCCg -3'
miRNA:   3'- -CGCaau-----CGGUGcUAG--UCGGCCAaUGG- -5'
24371 3' -51.6 NC_005264.1 + 100092 0.67 0.981397
Target:  5'- aUGgcGGCCGCGGggcUCAGCgacgacgCGGUUGCg -3'
miRNA:   3'- cGCaaUCGGUGCU---AGUCG-------GCCAAUGg -5'
24371 3' -51.6 NC_005264.1 + 55803 0.67 0.980974
Target:  5'- ----cGGCUACGAgagcaacucaacauUCAGCCGGUgGCg -3'
miRNA:   3'- cgcaaUCGGUGCU--------------AGUCGGCCAaUGg -5'
24371 3' -51.6 NC_005264.1 + 100573 0.67 0.980974
Target:  5'- aGCGU--GCCGCGAUCGucucggaaaccgucGCCaaGGaUACCg -3'
miRNA:   3'- -CGCAauCGGUGCUAGU--------------CGG--CCaAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.