miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 81762 0.67 0.853638
Target:  5'- -cGGCGCUcUCGGCaGACCGgUUGCCGu -3'
miRNA:   3'- gaUCGUGGcAGCUGgUUGGC-AGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 82273 0.67 0.875729
Target:  5'- gCUGGUcUCGUgGACCAaaagcucgcuuGCCG-CGCCGu -3'
miRNA:   3'- -GAUCGuGGCAgCUGGU-----------UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 124177 0.67 0.875729
Target:  5'- -gGGCgucGCCGUCGucgucgguGCCGGCC-UCGUCGg -3'
miRNA:   3'- gaUCG---UGGCAGC--------UGGUUGGcAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 141419 0.67 0.875729
Target:  5'- gUAGCucCUGUuaCGGCCAACuCGcuaUCGCCGg -3'
miRNA:   3'- gAUCGu-GGCA--GCUGGUUG-GC---AGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 75092 0.67 0.882682
Target:  5'- -cGGCGCUG-CGGCaggcGCCGgCGCCGa -3'
miRNA:   3'- gaUCGUGGCaGCUGgu--UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 156998 0.67 0.880618
Target:  5'- -gGGCgauaACCG-CGGCCAggcgaguggcggccACCGcCGCCGg -3'
miRNA:   3'- gaUCG----UGGCaGCUGGU--------------UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 94510 0.68 0.821526
Target:  5'- uUAGUgcaGCCGUCGGCCAcgugggagggcaGCgG-CGCCGc -3'
miRNA:   3'- gAUCG---UGGCAGCUGGU------------UGgCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 144817 0.68 0.845097
Target:  5'- aUGGUuaaccugACCG-CGGCCGACCcGcCGCCGu -3'
miRNA:   3'- gAUCG-------UGGCaGCUGGUUGG-CaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 159669 0.68 0.837941
Target:  5'- --cGCGCCGUCGcgcGCgGAggGUCGCCGu -3'
miRNA:   3'- gauCGUGGCAGC---UGgUUggCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 93490 0.68 0.837941
Target:  5'- -aGGCGCUGcuggCGGCCGGCgCGUCGUUc -3'
miRNA:   3'- gaUCGUGGCa---GCUGGUUG-GCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 88690 0.68 0.816471
Target:  5'- aUGGCACCGUCcuucacugcuucuagGACaUAACgGUCGCgGg -3'
miRNA:   3'- gAUCGUGGCAG---------------CUG-GUUGgCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 127382 0.68 0.813068
Target:  5'- -gGGCgACCGUCGcugauGCUuACCGgCGCCGg -3'
miRNA:   3'- gaUCG-UGGCAGC-----UGGuUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 158332 0.68 0.821526
Target:  5'- aCUGGCACgCGgaacacaagCGGCCGcACCG-CGCCc -3'
miRNA:   3'- -GAUCGUG-GCa--------GCUGGU-UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 87747 0.68 0.82982
Target:  5'- -cGGCGCCGgCG-CCuGCCGcagCGCCGc -3'
miRNA:   3'- gaUCGUGGCaGCuGGuUGGCa--GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 5780 0.68 0.837941
Target:  5'- --cGCgACCGUCGugCAccACCGaggCGCCc -3'
miRNA:   3'- gauCG-UGGCAGCugGU--UGGCa--GCGGc -5'
24371 5' -56.7 NC_005264.1 + 86615 0.68 0.813068
Target:  5'- -aAGCGCuaCGUUGAUCAACCGcCGCa- -3'
miRNA:   3'- gaUCGUG--GCAGCUGGUUGGCaGCGgc -5'
24371 5' -56.7 NC_005264.1 + 126144 0.68 0.813068
Target:  5'- --cGCGCCGUuagcgcCGGCCGACUGa-GCCGa -3'
miRNA:   3'- gauCGUGGCA------GCUGGUUGGCagCGGC- -5'
24371 5' -56.7 NC_005264.1 + 35482 0.68 0.837137
Target:  5'- -gAGUGCCG-CGGCCGAUCGcgacggcuugguaUCGCUGg -3'
miRNA:   3'- gaUCGUGGCaGCUGGUUGGC-------------AGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 124806 0.68 0.837941
Target:  5'- --cGCgACCGUCGugCAccACCGaggCGCCc -3'
miRNA:   3'- gauCG-UGGCAGCugGU--UGGCa--GCGGc -5'
24371 5' -56.7 NC_005264.1 + 159929 0.68 0.804452
Target:  5'- -cGGCGacuCCGUCGcuCUcGCCGUCGCCc -3'
miRNA:   3'- gaUCGU---GGCAGCu-GGuUGGCAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.