miRNA display CGI


Results 21 - 40 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 26177 0.71 0.661966
Target:  5'- -cGGCACUGUCGGCgGgGCCGUUGgCGc -3'
miRNA:   3'- gaUCGUGGCAGCUGgU-UGGCAGCgGC- -5'
24371 5' -56.7 NC_005264.1 + 144571 0.71 0.681881
Target:  5'- gCUAGCGCUGUaCGGCCcg-UGUCGCCc -3'
miRNA:   3'- -GAUCGUGGCA-GCUGGuugGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 74104 0.71 0.671939
Target:  5'- aUGGCGCgGUCGAC--GCUGUCGCgGc -3'
miRNA:   3'- gAUCGUGgCAGCUGguUGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 106031 0.71 0.671939
Target:  5'- --uGCGCCGcCGACCGacACCGgcgaugCGCCu -3'
miRNA:   3'- gauCGUGGCaGCUGGU--UGGCa-----GCGGc -5'
24371 5' -56.7 NC_005264.1 + 121397 0.7 0.749902
Target:  5'- cCUGGCACCGagUGGCCGucgcccgcaggaGCCcggCGCCGg -3'
miRNA:   3'- -GAUCGUGGCa-GCUGGU------------UGGca-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 74307 0.7 0.721173
Target:  5'- uCUGGCGCgCGgcaUGGCCAACgaguCGUCGUCGg -3'
miRNA:   3'- -GAUCGUG-GCa--GCUGGUUG----GCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 46615 0.7 0.740414
Target:  5'- -cGGCACCGUCguggGACCG--CGUgGCCGa -3'
miRNA:   3'- gaUCGUGGCAG----CUGGUugGCAgCGGC- -5'
24371 5' -56.7 NC_005264.1 + 2370 0.7 0.749902
Target:  5'- cCUGGCACCGagUGGCCGucgcccgcaggaGCCcggCGCCGg -3'
miRNA:   3'- -GAUCGUGGCa-GCUGGU------------UGGca-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 80637 0.7 0.730834
Target:  5'- gCUGGCGCCG-CuACCGucuaauacgaugGCCGcCGCCGa -3'
miRNA:   3'- -GAUCGUGGCaGcUGGU------------UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 154593 0.7 0.711438
Target:  5'- -gGGCGCCGcuggccaGACUAACCG-CGCUGg -3'
miRNA:   3'- gaUCGUGGCag-----CUGGUUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 42120 0.7 0.749902
Target:  5'- -cGGCACCGUCcuCCGcCCGacCGCCGg -3'
miRNA:   3'- gaUCGUGGCAGcuGGUuGGCa-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 59716 0.7 0.711438
Target:  5'- --cGCGCCGgCGGCU-ACCG-CGCCGg -3'
miRNA:   3'- gauCGUGGCaGCUGGuUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 80968 0.7 0.749902
Target:  5'- -aGGCGCCaUCGACCAAuuucuuccUCGaCGCCGa -3'
miRNA:   3'- gaUCGUGGcAGCUGGUU--------GGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 100572 0.69 0.768574
Target:  5'- -aAGCguGCCG-CGAUCGucucggaaACCGUCGCCa -3'
miRNA:   3'- gaUCG--UGGCaGCUGGU--------UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 149507 0.69 0.768574
Target:  5'- --cGCGCCGuucccuUCGgcuuaGCCAGgCGUCGCCGu -3'
miRNA:   3'- gauCGUGGC------AGC-----UGGUUgGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 16764 0.69 0.795686
Target:  5'- gUAGCGagGUC--CCGAUCGUCGCCGg -3'
miRNA:   3'- gAUCGUggCAGcuGGUUGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 118268 0.69 0.768574
Target:  5'- gCUGGCGUgGUUG-CCGGCgGUCGCCa -3'
miRNA:   3'- -GAUCGUGgCAGCuGGUUGgCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 43854 0.69 0.756486
Target:  5'- uUGGCGCUGg-GGCCGGCaaagacgucuucguCGUCGCCGu -3'
miRNA:   3'- gAUCGUGGCagCUGGUUG--------------GCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 144962 0.69 0.795686
Target:  5'- --cGCGCCGUaGAUCAGCC--CGCCGa -3'
miRNA:   3'- gauCGUGGCAgCUGGUUGGcaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 40903 0.69 0.786779
Target:  5'- -cGGCGacuCCGUCG-CUucGCCGUCGCCc -3'
miRNA:   3'- gaUCGU---GGCAGCuGGu-UGGCAGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.