Results 61 - 80 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24371 | 5' | -56.7 | NC_005264.1 | + | 25408 | 0.67 | 0.871457 |
Target: 5'- -gAGCACCGccaggccgaaguacUCGGCCAagcaguccaggGCCuccucgaacugcuuGUCGCCGa -3' miRNA: 3'- gaUCGUGGC--------------AGCUGGU-----------UGG--------------CAGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 5150 | 0.67 | 0.875729 |
Target: 5'- -gGGCgucGCCGUCGucgucgguGCCGGCC-UCGUCGg -3' miRNA: 3'- gaUCG---UGGCAGC--------UGGUUGGcAGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 138252 | 0.67 | 0.875729 |
Target: 5'- -aGGCGCUGUUGGUC-ACCaUCGCCGa -3' miRNA: 3'- gaUCGUGGCAGCUGGuUGGcAGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 45781 | 0.67 | 0.851332 |
Target: 5'- -gGGCGCCGgagCGGCUAuugcggucugggccGCCG-CGCUGa -3' miRNA: 3'- gaUCGUGGCa--GCUGGU--------------UGGCaGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 104819 | 0.67 | 0.889422 |
Target: 5'- -gGGCGCCGcaCGACgGcCUGUcCGCCGg -3' miRNA: 3'- gaUCGUGGCa-GCUGgUuGGCA-GCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 37971 | 0.67 | 0.880618 |
Target: 5'- -gGGCgauaACCG-CGGCCAggcgaguggcggccACCGcCGCCGg -3' miRNA: 3'- gaUCG----UGGCaGCUGGU--------------UGGCaGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 120817 | 0.67 | 0.875729 |
Target: 5'- --cGUGCgCGUCGACacugccGCCGUgGCCGa -3' miRNA: 3'- gauCGUG-GCAGCUGgu----UGGCAgCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 40500 | 0.67 | 0.853638 |
Target: 5'- --uGC-CCGUCGGCCcGCCGUUcggaaGCCc -3' miRNA: 3'- gauCGuGGCAGCUGGuUGGCAG-----CGGc -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 82273 | 0.67 | 0.875729 |
Target: 5'- gCUGGUcUCGUgGACCAaaagcucgcuuGCCG-CGCCGu -3' miRNA: 3'- -GAUCGuGGCAgCUGGU-----------UGGCaGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 124177 | 0.67 | 0.875729 |
Target: 5'- -gGGCgucGCCGUCGucgucgguGCCGGCC-UCGUCGg -3' miRNA: 3'- gaUCG---UGGCAGC--------UGGUUGGcAGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 131803 | 0.67 | 0.853638 |
Target: 5'- --cGCAgCCGcaCGACCGcuaggcggcACCGUCGCCc -3' miRNA: 3'- gauCGU-GGCa-GCUGGU---------UGGCAGCGGc -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 147283 | 0.67 | 0.875729 |
Target: 5'- -gAGCugcacGCCGUugaggaugcUGACCGcaaucccauuugACCGUCGCCGc -3' miRNA: 3'- gaUCG-----UGGCA---------GCUGGU------------UGGCAGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 75092 | 0.67 | 0.882682 |
Target: 5'- -cGGCGCUG-CGGCaggcGCCGgCGCCGa -3' miRNA: 3'- gaUCGUGGCaGCUGgu--UGGCaGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 21584 | 0.67 | 0.868567 |
Target: 5'- gCUAGUACCGUCGGC-GACCGaaauauaggUGCUa -3' miRNA: 3'- -GAUCGUGGCAGCUGgUUGGCa--------GCGGc -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 21537 | 0.67 | 0.8582 |
Target: 5'- -cAGCACCGggCGACCGuuuaugguguucuCCGaggaCGCCGg -3' miRNA: 3'- gaUCGUGGCa-GCUGGUu------------GGCa---GCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 126092 | 0.67 | 0.861202 |
Target: 5'- -cGGCGCCGgcCGGC--GCCGUCGCg- -3' miRNA: 3'- gaUCGUGGCa-GCUGguUGGCAGCGgc -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 156998 | 0.67 | 0.880618 |
Target: 5'- -gGGCgauaACCG-CGGCCAggcgaguggcggccACCGcCGCCGg -3' miRNA: 3'- gaUCG----UGGCaGCUGGU--------------UGGCaGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 69001 | 0.67 | 0.861202 |
Target: 5'- gUGGC-CCG-CGGCC--CUGUCGCCa -3' miRNA: 3'- gAUCGuGGCaGCUGGuuGGCAGCGGc -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 7065 | 0.67 | 0.861202 |
Target: 5'- -cGGCGCCGgcCGGC--GCCGUCGCg- -3' miRNA: 3'- gaUCGUGGCa-GCUGguUGGCAGCGgc -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 145466 | 0.67 | 0.853638 |
Target: 5'- -cGGCGCaCGUacacaGACCGcGCCGcCGCCa -3' miRNA: 3'- gaUCGUG-GCAg----CUGGU-UGGCaGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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