miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 131803 0.67 0.853638
Target:  5'- --cGCAgCCGcaCGACCGcuaggcggcACCGUCGCCc -3'
miRNA:   3'- gauCGU-GGCa-GCUGGU---------UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 145466 0.67 0.853638
Target:  5'- -cGGCGCaCGUacacaGACCGcGCCGcCGCCa -3'
miRNA:   3'- gaUCGUG-GCAg----CUGGU-UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 12777 0.67 0.853638
Target:  5'- --cGCAgCCGcaCGACCGcuaggcggcACCGUCGCCc -3'
miRNA:   3'- gauCGU-GGCa-GCUGGU---------UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 131991 0.67 0.853638
Target:  5'- -aGGCcggugGCgGUgGGCCGACCGgCGCCa -3'
miRNA:   3'- gaUCG-----UGgCAgCUGGUUGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 40500 0.67 0.853638
Target:  5'- --uGC-CCGUCGGCCcGCCGUUcggaaGCCc -3'
miRNA:   3'- gauCGuGGCAGCUGGuUGGCAG-----CGGc -5'
24371 5' -56.7 NC_005264.1 + 159527 0.67 0.853638
Target:  5'- --uGC-CCGUCGGCCcGCCGUUcggaaGCCc -3'
miRNA:   3'- gauCGuGGCAGCUGGuUGGCAG-----CGGc -5'
24371 5' -56.7 NC_005264.1 + 21537 0.67 0.8582
Target:  5'- -cAGCACCGggCGACCGuuuaugguguucuCCGaggaCGCCGg -3'
miRNA:   3'- gaUCGUGGCa-GCUGGUu------------GGCa---GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 106436 0.67 0.861202
Target:  5'- -cGGCGCCGcgcUCGAUaugCGAUCGUCGCg- -3'
miRNA:   3'- gaUCGUGGC---AGCUG---GUUGGCAGCGgc -5'
24371 5' -56.7 NC_005264.1 + 7065 0.67 0.861202
Target:  5'- -cGGCGCCGgcCGGC--GCCGUCGCg- -3'
miRNA:   3'- gaUCGUGGCa-GCUGguUGGCAGCGgc -5'
24371 5' -56.7 NC_005264.1 + 69001 0.67 0.861202
Target:  5'- gUGGC-CCG-CGGCC--CUGUCGCCa -3'
miRNA:   3'- gAUCGuGGCaGCUGGuuGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 126092 0.67 0.861202
Target:  5'- -cGGCGCCGgcCGGC--GCCGUCGCg- -3'
miRNA:   3'- gaUCGUGGCa-GCUGguUGGCAGCGgc -5'
24371 5' -56.7 NC_005264.1 + 40642 0.67 0.868567
Target:  5'- --cGCGCCGUCGcgacGCgGAggGUCGCCGu -3'
miRNA:   3'- gauCGUGGCAGC----UGgUUggCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 21584 0.67 0.868567
Target:  5'- gCUAGUACCGUCGGC-GACCGaaauauaggUGCUa -3'
miRNA:   3'- -GAUCGUGGCAGCUGgUUGGCa--------GCGGc -5'
24371 5' -56.7 NC_005264.1 + 25408 0.67 0.871457
Target:  5'- -gAGCACCGccaggccgaaguacUCGGCCAagcaguccaggGCCuccucgaacugcuuGUCGCCGa -3'
miRNA:   3'- gaUCGUGGC--------------AGCUGGU-----------UGG--------------CAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 5150 0.67 0.875729
Target:  5'- -gGGCgucGCCGUCGucgucgguGCCGGCC-UCGUCGg -3'
miRNA:   3'- gaUCG---UGGCAGC--------UGGUUGGcAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 138252 0.67 0.875729
Target:  5'- -aGGCGCUGUUGGUC-ACCaUCGCCGa -3'
miRNA:   3'- gaUCGUGGCAGCUGGuUGGcAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 120817 0.67 0.875729
Target:  5'- --cGUGCgCGUCGACacugccGCCGUgGCCGa -3'
miRNA:   3'- gauCGUG-GCAGCUGgu----UGGCAgCGGC- -5'
24371 5' -56.7 NC_005264.1 + 147283 0.67 0.875729
Target:  5'- -gAGCugcacGCCGUugaggaugcUGACCGcaaucccauuugACCGUCGCCGc -3'
miRNA:   3'- gaUCG-----UGGCA---------GCUGGU------------UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 141419 0.67 0.875729
Target:  5'- gUAGCucCUGUuaCGGCCAACuCGcuaUCGCCGg -3'
miRNA:   3'- gAUCGu-GGCA--GCUGGUUG-GC---AGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 124177 0.67 0.875729
Target:  5'- -gGGCgucGCCGUCGucgucgguGCCGGCC-UCGUCGg -3'
miRNA:   3'- gaUCG---UGGCAGC--------UGGUUGGcAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.