miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 46536 0.66 0.895945
Target:  5'- -aAGUucCCGUCGAaggccaCAGCCGUaGCCGc -3'
miRNA:   3'- gaUCGu-GGCAGCUg-----GUUGGCAgCGGC- -5'
24371 5' -56.7 NC_005264.1 + 46615 0.7 0.740414
Target:  5'- -cGGCACCGUCguggGACCG--CGUgGCCGa -3'
miRNA:   3'- gaUCGUGGCAG----CUGGUugGCAgCGGC- -5'
24371 5' -56.7 NC_005264.1 + 48005 0.66 0.910695
Target:  5'- --cGCACCGUggauauguuuucccaCGACCAugGCgCGUgGCCa -3'
miRNA:   3'- gauCGUGGCA---------------GCUGGU--UG-GCAgCGGc -5'
24371 5' -56.7 NC_005264.1 + 51414 0.66 0.908327
Target:  5'- aUGGCguacGCCGggGAgCcGCCGUCGCCc -3'
miRNA:   3'- gAUCG----UGGCagCUgGuUGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 55621 0.75 0.457822
Target:  5'- gCUGGCGCCGaauGCCAACCGcgcgCGCCGc -3'
miRNA:   3'- -GAUCGUGGCagcUGGUUGGCa---GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 59716 0.7 0.711438
Target:  5'- --cGCGCCGgCGGCU-ACCG-CGCCGg -3'
miRNA:   3'- gauCGUGGCaGCUGGuUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 64040 0.73 0.532893
Target:  5'- -cAGCACCGcCGAuacCCGAUCGUCGCg- -3'
miRNA:   3'- gaUCGUGGCaGCU---GGUUGGCAGCGgc -5'
24371 5' -56.7 NC_005264.1 + 64150 0.73 0.572078
Target:  5'- -cGGCGCCG-CGAuCCGGCCGgugugcaagCGCCGc -3'
miRNA:   3'- gaUCGUGGCaGCU-GGUUGGCa--------GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 64295 0.66 0.919806
Target:  5'- -gAGUAUCG-CGGCCcacAGCgCGUUGCCGc -3'
miRNA:   3'- gaUCGUGGCaGCUGG---UUG-GCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 66609 0.67 0.853638
Target:  5'- --uGCGCCG-CGuuGCCGgcGCCGUCGCgGc -3'
miRNA:   3'- gauCGUGGCaGC--UGGU--UGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 68138 0.72 0.591938
Target:  5'- -gGGCGCCGUUGACCAcgGCCGUuaugugaaCGuuGc -3'
miRNA:   3'- gaUCGUGGCAGCUGGU--UGGCA--------GCggC- -5'
24371 5' -56.7 NC_005264.1 + 68256 0.66 0.91418
Target:  5'- --cGCGCCGcgggCGGCCugcuGCUGcCGCCu -3'
miRNA:   3'- gauCGUGGCa---GCUGGu---UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 69001 0.67 0.861202
Target:  5'- gUGGC-CCG-CGGCC--CUGUCGCCa -3'
miRNA:   3'- gAUCGuGGCaGCUGGuuGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 74104 0.71 0.671939
Target:  5'- aUGGCGCgGUCGAC--GCUGUCGCgGc -3'
miRNA:   3'- gAUCGUGgCAGCUGguUGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 74307 0.7 0.721173
Target:  5'- uCUGGCGCgCGgcaUGGCCAACgaguCGUCGUCGg -3'
miRNA:   3'- -GAUCGUG-GCa--GCUGGUUG----GCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 75092 0.67 0.882682
Target:  5'- -cGGCGCUG-CGGCaggcGCCGgCGCCGa -3'
miRNA:   3'- gaUCGUGGCaGCUGgu--UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 80637 0.7 0.730834
Target:  5'- gCUGGCGCCG-CuACCGucuaauacgaugGCCGcCGCCGa -3'
miRNA:   3'- -GAUCGUGGCaGcUGGU------------UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 80968 0.7 0.749902
Target:  5'- -aGGCGCCaUCGACCAAuuucuuccUCGaCGCCGa -3'
miRNA:   3'- gaUCGUGGcAGCUGGUU--------GGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 81762 0.67 0.853638
Target:  5'- -cGGCGCUcUCGGCaGACCGgUUGCCGu -3'
miRNA:   3'- gaUCGUGGcAGCUGgUUGGC-AGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 82273 0.67 0.875729
Target:  5'- gCUGGUcUCGUgGACCAaaagcucgcuuGCCG-CGCCGu -3'
miRNA:   3'- -GAUCGuGGCAgCUGGU-----------UGGCaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.