miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 139069 0.66 0.895945
Target:  5'- -aGGCGCCGguu-CCuuGCUGUCGCCu -3'
miRNA:   3'- gaUCGUGGCagcuGGu-UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 138634 0.66 0.895945
Target:  5'- --cGCGCUGgcuUCGGCCAccggcACCG-CGCCa -3'
miRNA:   3'- gauCGUGGC---AGCUGGU-----UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 138252 0.67 0.875729
Target:  5'- -aGGCGCUGUUGGUC-ACCaUCGCCGa -3'
miRNA:   3'- gaUCGUGGCAGCUGGuUGGcAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 132443 0.75 0.431145
Target:  5'- --cGCACCGgcgcgCGACC-GCCGcCGCCGa -3'
miRNA:   3'- gauCGUGGCa----GCUGGuUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 132225 0.75 0.439937
Target:  5'- --cGCGgauCCGUCG-CCGccGCCGUCGCCGg -3'
miRNA:   3'- gauCGU---GGCAGCuGGU--UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 131991 0.67 0.853638
Target:  5'- -aGGCcggugGCgGUgGGCCGACCGgCGCCa -3'
miRNA:   3'- gaUCG-----UGgCAgCUGGUUGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 131973 0.66 0.919806
Target:  5'- -gAGaCGCCGUUGccuACCGggcggcgcGCCGcCGCCGa -3'
miRNA:   3'- gaUC-GUGGCAGC---UGGU--------UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 131803 0.67 0.853638
Target:  5'- --cGCAgCCGcaCGACCGcuaggcggcACCGUCGCCc -3'
miRNA:   3'- gauCGU-GGCa-GCUGGU---------UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 130445 0.66 0.91418
Target:  5'- -cAGCACaaaGUCGcggcggacGCCGGCCGccggcauccUCGCCa -3'
miRNA:   3'- gaUCGUGg--CAGC--------UGGUUGGC---------AGCGGc -5'
24371 5' -56.7 NC_005264.1 + 130027 0.66 0.921992
Target:  5'- -cGGCGCCGcaggcuUccgcgaugaugguugCGGCCAGaCCGUCGCUGc -3'
miRNA:   3'- gaUCGUGGC------A---------------GCUGGUU-GGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 129199 1.08 0.00375
Target:  5'- gCUAGCACCGUCGACCAACCGUCGCCGc -3'
miRNA:   3'- -GAUCGUGGCAGCUGGUUGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 127382 0.68 0.813068
Target:  5'- -gGGCgACCGUCGcugauGCUuACCGgCGCCGg -3'
miRNA:   3'- gaUCG-UGGCAGC-----UGGuUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 127344 0.66 0.908327
Target:  5'- --uGCGCCG-CGGCgucGCCGUCGUCc -3'
miRNA:   3'- gauCGUGGCaGCUGgu-UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 126740 0.72 0.591938
Target:  5'- -gAGUACCaUCuGCCAGCCG-CGCCGa -3'
miRNA:   3'- gaUCGUGGcAGcUGGUUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 126144 0.68 0.813068
Target:  5'- --cGCGCCGUuagcgcCGGCCGACUGa-GCCGa -3'
miRNA:   3'- gauCGUGGCA------GCUGGUUGGCagCGGC- -5'
24371 5' -56.7 NC_005264.1 + 126092 0.67 0.861202
Target:  5'- -cGGCGCCGgcCGGC--GCCGUCGCg- -3'
miRNA:   3'- gaUCGUGGCa-GCUGguUGGCAGCGgc -5'
24371 5' -56.7 NC_005264.1 + 125975 0.66 0.913605
Target:  5'- -aGGCAgauaCGUCGACCAccaauacaucuucGUCGUCGCUGu -3'
miRNA:   3'- gaUCGUg---GCAGCUGGU-------------UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 125746 0.67 0.853638
Target:  5'- -gGGCGCCGUCc-CCGgaACUGcCGCCGc -3'
miRNA:   3'- gaUCGUGGCAGcuGGU--UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 124806 0.68 0.837941
Target:  5'- --cGCgACCGUCGugCAccACCGaggCGCCc -3'
miRNA:   3'- gauCG-UGGCAGCugGU--UGGCa--GCGGc -5'
24371 5' -56.7 NC_005264.1 + 124177 0.67 0.875729
Target:  5'- -gGGCgucGCCGUCGucgucgguGCCGGCC-UCGUCGg -3'
miRNA:   3'- gaUCG---UGGCAGC--------UGGUUGGcAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.