Results 41 - 60 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24371 | 5' | -56.7 | NC_005264.1 | + | 155781 | 0.75 | 0.448831 |
Target: 5'- -cGGCGCCGgcCGGC--GCCGUCGCCGc -3' miRNA: 3'- gaUCGUGGCa-GCUGguUGGCAGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 132225 | 0.75 | 0.439937 |
Target: 5'- --cGCGgauCCGUCG-CCGccGCCGUCGCCGg -3' miRNA: 3'- gauCGU---GGCAGCuGGU--UGGCAGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 132443 | 0.75 | 0.431145 |
Target: 5'- --cGCACCGgcgcgCGACC-GCCGcCGCCGa -3' miRNA: 3'- gauCGUGGCa----GCUGGuUGGCaGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 7406 | 0.76 | 0.422457 |
Target: 5'- -cGGCGCCGUCGuCCAuugguUCGUgCGCCGg -3' miRNA: 3'- gaUCGUGGCAGCuGGUu----GGCA-GCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 121397 | 0.7 | 0.749902 |
Target: 5'- cCUGGCACCGagUGGCCGucgcccgcaggaGCCcggCGCCGg -3' miRNA: 3'- -GAUCGUGGCa-GCUGGU------------UGGca-GCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 80968 | 0.7 | 0.749902 |
Target: 5'- -aGGCGCCaUCGACCAAuuucuuccUCGaCGCCGa -3' miRNA: 3'- gaUCGUGGcAGCUGGUU--------GGCaGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 43854 | 0.69 | 0.756486 |
Target: 5'- uUGGCGCUGg-GGCCGGCaaagacgucuucguCGUCGCCGu -3' miRNA: 3'- gAUCGUGGCagCUGGUUG--------------GCAGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 159527 | 0.67 | 0.853638 |
Target: 5'- --uGC-CCGUCGGCCcGCCGUUcggaaGCCc -3' miRNA: 3'- gauCGuGGCAGCUGGuUGGCAG-----CGGc -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 131803 | 0.67 | 0.853638 |
Target: 5'- --cGCAgCCGcaCGACCGcuaggcggcACCGUCGCCc -3' miRNA: 3'- gauCGU-GGCa-GCUGGU---------UGGCAGCGGc -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 66609 | 0.67 | 0.853638 |
Target: 5'- --uGCGCCG-CGuuGCCGgcGCCGUCGCgGc -3' miRNA: 3'- gauCGUGGCaGC--UGGU--UGGCAGCGgC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 144817 | 0.68 | 0.845097 |
Target: 5'- aUGGUuaaccugACCG-CGGCCGACCcGcCGCCGu -3' miRNA: 3'- gAUCG-------UGGCaGCUGGUUGG-CaGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 159669 | 0.68 | 0.837941 |
Target: 5'- --cGCGCCGUCGcgcGCgGAggGUCGCCGu -3' miRNA: 3'- gauCGUGGCAGC---UGgUUggCAGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 93490 | 0.68 | 0.837941 |
Target: 5'- -aGGCGCUGcuggCGGCCGGCgCGUCGUUc -3' miRNA: 3'- gaUCGUGGCa---GCUGGUUG-GCAGCGGc -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 124806 | 0.68 | 0.837941 |
Target: 5'- --cGCgACCGUCGugCAccACCGaggCGCCc -3' miRNA: 3'- gauCG-UGGCAGCugGU--UGGCa--GCGGc -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 35482 | 0.68 | 0.837137 |
Target: 5'- -gAGUGCCG-CGGCCGAUCGcgacggcuugguaUCGCUGg -3' miRNA: 3'- gaUCGUGGCaGCUGGUUGGC-------------AGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 126144 | 0.68 | 0.813068 |
Target: 5'- --cGCGCCGUuagcgcCGGCCGACUGa-GCCGa -3' miRNA: 3'- gauCGUGGCA------GCUGGUUGGCagCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 86615 | 0.68 | 0.813068 |
Target: 5'- -aAGCGCuaCGUUGAUCAACCGcCGCa- -3' miRNA: 3'- gaUCGUG--GCAGCUGGUUGGCaGCGgc -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 127382 | 0.68 | 0.813068 |
Target: 5'- -gGGCgACCGUCGcugauGCUuACCGgCGCCGg -3' miRNA: 3'- gaUCG-UGGCAGC-----UGGuUGGCaGCGGC- -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 159929 | 0.68 | 0.804452 |
Target: 5'- -cGGCGacuCCGUCGcuCUcGCCGUCGCCc -3' miRNA: 3'- gaUCGU---GGCAGCu-GGuUGGCAGCGGc -5' |
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24371 | 5' | -56.7 | NC_005264.1 | + | 144962 | 0.69 | 0.795686 |
Target: 5'- --cGCGCCGUaGAUCAGCC--CGCCGa -3' miRNA: 3'- gauCGUGGCAgCUGGUUGGcaGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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