miRNA display CGI


Results 61 - 80 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 21921 0.66 0.895945
Target:  5'- gUAGUGCUGUCu-UCAACgGUUGCCGc -3'
miRNA:   3'- gAUCGUGGCAGcuGGUUGgCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 3768 0.66 0.895945
Target:  5'- -gGGCGCUG-CGGgcccuuggUCGACCGcCGCCGa -3'
miRNA:   3'- gaUCGUGGCaGCU--------GGUUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 142871 0.67 0.889422
Target:  5'- --uGUugCGUCGACUcgcGCCG-CGCCu -3'
miRNA:   3'- gauCGugGCAGCUGGu--UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 104819 0.67 0.889422
Target:  5'- -gGGCGCCGcaCGACgGcCUGUcCGCCGg -3'
miRNA:   3'- gaUCGUGGCa-GCUGgUuGGCA-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 37971 0.67 0.880618
Target:  5'- -gGGCgauaACCG-CGGCCAggcgaguggcggccACCGcCGCCGg -3'
miRNA:   3'- gaUCG----UGGCaGCUGGU--------------UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 120817 0.67 0.875729
Target:  5'- --cGUGCgCGUCGACacugccGCCGUgGCCGa -3'
miRNA:   3'- gauCGUG-GCAGCUGgu----UGGCAgCGGC- -5'
24371 5' -56.7 NC_005264.1 + 138252 0.67 0.875729
Target:  5'- -aGGCGCUGUUGGUC-ACCaUCGCCGa -3'
miRNA:   3'- gaUCGUGGCAGCUGGuUGGcAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 5150 0.67 0.875729
Target:  5'- -gGGCgucGCCGUCGucgucgguGCCGGCC-UCGUCGg -3'
miRNA:   3'- gaUCG---UGGCAGC--------UGGUUGGcAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 25408 0.67 0.871457
Target:  5'- -gAGCACCGccaggccgaaguacUCGGCCAagcaguccaggGCCuccucgaacugcuuGUCGCCGa -3'
miRNA:   3'- gaUCGUGGC--------------AGCUGGU-----------UGG--------------CAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 138634 0.66 0.895945
Target:  5'- --cGCGCUGgcuUCGGCCAccggcACCG-CGCCa -3'
miRNA:   3'- gauCGUGGC---AGCUGGU-----UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 139069 0.66 0.895945
Target:  5'- -aGGCGCCGguu-CCuuGCUGUCGCCu -3'
miRNA:   3'- gaUCGUGGCagcuGGu-UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 129199 1.08 0.00375
Target:  5'- gCUAGCACCGUCGACCAACCGUCGCCGc -3'
miRNA:   3'- -GAUCGUGGCAGCUGGUUGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 130027 0.66 0.921992
Target:  5'- -cGGCGCCGcaggcuUccgcgaugaugguugCGGCCAGaCCGUCGCUGc -3'
miRNA:   3'- gaUCGUGGC------A---------------GCUGGUU-GGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 39100 0.66 0.919806
Target:  5'- -cAGCGgCGUCugGACCAgcuGCUGUCGUgGa -3'
miRNA:   3'- gaUCGUgGCAG--CUGGU---UGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 32374 0.66 0.919806
Target:  5'- uCUGGCgaggauGCCGgCGGCCGGC-GUCcGCCGc -3'
miRNA:   3'- -GAUCG------UGGCaGCUGGUUGgCAG-CGGC- -5'
24371 5' -56.7 NC_005264.1 + 11418 0.66 0.91418
Target:  5'- -cAGCACaaaGUCGcggcggacGCCGGCCGccggcauccUCGCCa -3'
miRNA:   3'- gaUCGUGg--CAGC--------UGGUUGGC---------AGCGGc -5'
24371 5' -56.7 NC_005264.1 + 35795 0.66 0.908327
Target:  5'- gUGGCGCCGUCGuggcgggcGCCucuGCCGgcccCGCa- -3'
miRNA:   3'- gAUCGUGGCAGC--------UGGu--UGGCa---GCGgc -5'
24371 5' -56.7 NC_005264.1 + 22570 0.66 0.908327
Target:  5'- aCUGGCGuuGcccccuggaagCGGCgucACCGUCGCCGa -3'
miRNA:   3'- -GAUCGUggCa----------GCUGgu-UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 8317 0.66 0.908327
Target:  5'- --uGCGCCG-CGGCgucGCCGUCGUCc -3'
miRNA:   3'- gauCGUGGCaGCUGgu-UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 155559 0.66 0.902248
Target:  5'- --cGCACUGgcggGGCUcuCCGUCGCCa -3'
miRNA:   3'- gauCGUGGCag--CUGGuuGGCAGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.