miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 106436 0.67 0.861202
Target:  5'- -cGGCGCCGcgcUCGAUaugCGAUCGUCGCg- -3'
miRNA:   3'- gaUCGUGGC---AGCUG---GUUGGCAGCGgc -5'
24371 5' -56.7 NC_005264.1 + 25408 0.67 0.871457
Target:  5'- -gAGCACCGccaggccgaaguacUCGGCCAagcaguccaggGCCuccucgaacugcuuGUCGCCGa -3'
miRNA:   3'- gaUCGUGGC--------------AGCUGGU-----------UGG--------------CAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 138634 0.66 0.895945
Target:  5'- --cGCGCUGgcuUCGGCCAccggcACCG-CGCCa -3'
miRNA:   3'- gauCGUGGC---AGCUGGU-----UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 32374 0.66 0.919806
Target:  5'- uCUGGCgaggauGCCGgCGGCCGGC-GUCcGCCGc -3'
miRNA:   3'- -GAUCG------UGGCaGCUGGUUGgCAG-CGGC- -5'
24371 5' -56.7 NC_005264.1 + 158332 0.68 0.821526
Target:  5'- aCUGGCACgCGgaacacaagCGGCCGcACCG-CGCCc -3'
miRNA:   3'- -GAUCGUG-GCa--------GCUGGU-UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 12777 0.67 0.853638
Target:  5'- --cGCAgCCGcaCGACCGcuaggcggcACCGUCGCCc -3'
miRNA:   3'- gauCGU-GGCa-GCUGGU---------UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 138252 0.67 0.875729
Target:  5'- -aGGCGCUGUUGGUC-ACCaUCGCCGa -3'
miRNA:   3'- gaUCGUGGCAGCUGGuUGGcAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 39100 0.66 0.919806
Target:  5'- -cAGCGgCGUCugGACCAgcuGCUGUCGUgGa -3'
miRNA:   3'- gaUCGUgGCAG--CUGGU---UGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 40500 0.67 0.853638
Target:  5'- --uGC-CCGUCGGCCcGCCGUUcggaaGCCc -3'
miRNA:   3'- gauCGuGGCAGCUGGuUGGCAG-----CGGc -5'
24371 5' -56.7 NC_005264.1 + 130027 0.66 0.921992
Target:  5'- -cGGCGCCGcaggcuUccgcgaugaugguugCGGCCAGaCCGUCGCUGc -3'
miRNA:   3'- gaUCGUGGC------A---------------GCUGGUU-GGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 5150 0.67 0.875729
Target:  5'- -gGGCgucGCCGUCGucgucgguGCCGGCC-UCGUCGg -3'
miRNA:   3'- gaUCG---UGGCAGC--------UGGUUGGcAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 69001 0.67 0.861202
Target:  5'- gUGGC-CCG-CGGCC--CUGUCGCCa -3'
miRNA:   3'- gAUCGuGGCaGCUGGuuGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 104819 0.67 0.889422
Target:  5'- -gGGCGCCGcaCGACgGcCUGUcCGCCGg -3'
miRNA:   3'- gaUCGUGGCa-GCUGgUuGGCA-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 21921 0.66 0.895945
Target:  5'- gUAGUGCUGUCu-UCAACgGUUGCCGc -3'
miRNA:   3'- gAUCGUGGCAGcuGGUUGgCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 8317 0.66 0.908327
Target:  5'- --uGCGCCG-CGGCgucGCCGUCGUCc -3'
miRNA:   3'- gauCGUGGCaGCUGgu-UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 11418 0.66 0.91418
Target:  5'- -cAGCACaaaGUCGcggcggacGCCGGCCGccggcauccUCGCCa -3'
miRNA:   3'- gaUCGUGg--CAGC--------UGGUUGGC---------AGCGGc -5'
24371 5' -56.7 NC_005264.1 + 8355 0.68 0.813068
Target:  5'- -gGGCgACCGUCGcugauGCUuACCGgCGCCGg -3'
miRNA:   3'- gaUCG-UGGCAGC-----UGGuUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 94510 0.68 0.821526
Target:  5'- uUAGUgcaGCCGUCGGCCAcgugggagggcaGCgG-CGCCGc -3'
miRNA:   3'- gAUCG---UGGCAGCUGGU------------UGgCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 45781 0.67 0.851332
Target:  5'- -gGGCGCCGgagCGGCUAuugcggucugggccGCCG-CGCUGa -3'
miRNA:   3'- gaUCGUGGCa--GCUGGU--------------UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 131991 0.67 0.853638
Target:  5'- -aGGCcggugGCgGUgGGCCGACCGgCGCCa -3'
miRNA:   3'- gaUCG-----UGgCAgCUGGUUGGCaGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.