miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 158332 0.68 0.821526
Target:  5'- aCUGGCACgCGgaacacaagCGGCCGcACCG-CGCCc -3'
miRNA:   3'- -GAUCGUG-GCa--------GCUGGU-UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 5150 0.67 0.875729
Target:  5'- -gGGCgucGCCGUCGucgucgguGCCGGCC-UCGUCGg -3'
miRNA:   3'- gaUCG---UGGCAGC--------UGGUUGGcAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 32374 0.66 0.919806
Target:  5'- uCUGGCgaggauGCCGgCGGCCGGC-GUCcGCCGc -3'
miRNA:   3'- -GAUCG------UGGCaGCUGGUUGgCAG-CGGC- -5'
24371 5' -56.7 NC_005264.1 + 87747 0.68 0.82982
Target:  5'- -cGGCGCCGgCG-CCuGCCGcagCGCCGc -3'
miRNA:   3'- gaUCGUGGCaGCuGGuUGGCa--GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 39100 0.66 0.919806
Target:  5'- -cAGCGgCGUCugGACCAgcuGCUGUCGUgGa -3'
miRNA:   3'- gaUCGUgGCAG--CUGGU---UGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 55621 0.75 0.457822
Target:  5'- gCUGGCGCCGaauGCCAACCGcgcgCGCCGc -3'
miRNA:   3'- -GAUCGUGGCagcUGGUUGGCa---GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 35795 0.66 0.908327
Target:  5'- gUGGCGCCGUCGuggcgggcGCCucuGCCGgcccCGCa- -3'
miRNA:   3'- gAUCGUGGCAGC--------UGGu--UGGCa---GCGgc -5'
24371 5' -56.7 NC_005264.1 + 101941 0.73 0.562207
Target:  5'- aCUGGCGgCGUCGGCCccACCGcggcguaCGCCGa -3'
miRNA:   3'- -GAUCGUgGCAGCUGGu-UGGCa------GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 19186 0.72 0.621921
Target:  5'- aUGGCuCCGg-GGCCGACCGUCgGCCc -3'
miRNA:   3'- gAUCGuGGCagCUGGUUGGCAG-CGGc -5'
24371 5' -56.7 NC_005264.1 + 74307 0.7 0.721173
Target:  5'- uCUGGCGCgCGgcaUGGCCAACgaguCGUCGUCGg -3'
miRNA:   3'- -GAUCGUG-GCa--GCUGGUUG----GCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 118268 0.69 0.768574
Target:  5'- gCUGGCGUgGUUG-CCGGCgGUCGCCa -3'
miRNA:   3'- -GAUCGUGgCAGCuGGUUGgCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 16764 0.69 0.795686
Target:  5'- gUAGCGagGUC--CCGAUCGUCGCCGg -3'
miRNA:   3'- gAUCGUggCAGcuGGUUGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 88690 0.68 0.816471
Target:  5'- aUGGCACCGUCcuucacugcuucuagGACaUAACgGUCGCgGg -3'
miRNA:   3'- gAUCGUGGCAG---------------CUG-GUUGgCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 81762 0.67 0.853638
Target:  5'- -cGGCGCUcUCGGCaGACCGgUUGCCGu -3'
miRNA:   3'- gaUCGUGGcAGCUGgUUGGC-AGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 12777 0.67 0.853638
Target:  5'- --cGCAgCCGcaCGACCGcuaggcggcACCGUCGCCc -3'
miRNA:   3'- gauCGU-GGCa-GCUGGU---------UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 69001 0.67 0.861202
Target:  5'- gUGGC-CCG-CGGCC--CUGUCGCCa -3'
miRNA:   3'- gAUCGuGGCaGCUGGuuGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 40642 0.67 0.868567
Target:  5'- --cGCGCCGUCGcgacGCgGAggGUCGCCGu -3'
miRNA:   3'- gauCGUGGCAGC----UGgUUggCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 37971 0.67 0.880618
Target:  5'- -gGGCgauaACCG-CGGCCAggcgaguggcggccACCGcCGCCGg -3'
miRNA:   3'- gaUCG----UGGCaGCUGGU--------------UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 3768 0.66 0.895945
Target:  5'- -gGGCGCUG-CGGgcccuuggUCGACCGcCGCCGa -3'
miRNA:   3'- gaUCGUGGCaGCU--------GGUUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 155559 0.66 0.902248
Target:  5'- --cGCACUGgcggGGCUcuCCGUCGCCa -3'
miRNA:   3'- gauCGUGGCag--CUGGuuGGCAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.