miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 12777 0.67 0.853638
Target:  5'- --cGCAgCCGcaCGACCGcuaggcggcACCGUCGCCc -3'
miRNA:   3'- gauCGU-GGCa-GCUGGU---------UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 125746 0.67 0.853638
Target:  5'- -gGGCGCCGUCc-CCGgaACUGcCGCCGc -3'
miRNA:   3'- gaUCGUGGCAGcuGGU--UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 158127 0.66 0.919806
Target:  5'- -cAGCGgCGUCugGACCAgcuGCUGUCGUgGa -3'
miRNA:   3'- gaUCGUgGCAG--CUGGU---UGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 66609 0.67 0.853638
Target:  5'- --uGCGCCG-CGuuGCCGgcGCCGUCGCgGc -3'
miRNA:   3'- gauCGUGGCaGC--UGGU--UGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 131803 0.67 0.853638
Target:  5'- --cGCAgCCGcaCGACCGcuaggcggcACCGUCGCCc -3'
miRNA:   3'- gauCGU-GGCa-GCUGGU---------UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 159527 0.67 0.853638
Target:  5'- --uGC-CCGUCGGCCcGCCGUUcggaaGCCc -3'
miRNA:   3'- gauCGuGGCAGCUGGuUGGCAG-----CGGc -5'
24371 5' -56.7 NC_005264.1 + 90754 0.73 0.571089
Target:  5'- -cGGCcauuacgACCG-CGACCAGCaCGUCGUCGg -3'
miRNA:   3'- gaUCG-------UGGCaGCUGGUUG-GCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 144817 0.68 0.845097
Target:  5'- aUGGUuaaccugACCG-CGGCCGACCcGcCGCCGu -3'
miRNA:   3'- gAUCG-------UGGCaGCUGGUUGG-CaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 42120 0.7 0.749902
Target:  5'- -cGGCACCGUCcuCCGcCCGacCGCCGg -3'
miRNA:   3'- gaUCGUGGCAGcuGGUuGGCa-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 121397 0.7 0.749902
Target:  5'- cCUGGCACCGagUGGCCGucgcccgcaggaGCCcggCGCCGg -3'
miRNA:   3'- -GAUCGUGGCa-GCUGGU------------UGGca-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 148456 0.66 0.91418
Target:  5'- --cGCugCG-CGACgAACCGuuUCGUCGg -3'
miRNA:   3'- gauCGugGCaGCUGgUUGGC--AGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 151401 0.66 0.919806
Target:  5'- uCUGGCgaggauGCCGgCGGCCGGC-GUCcGCCGc -3'
miRNA:   3'- -GAUCG------UGGCaGCUGGUUGgCAG-CGGC- -5'
24371 5' -56.7 NC_005264.1 + 64295 0.66 0.919806
Target:  5'- -gAGUAUCG-CGGCCcacAGCgCGUUGCCGc -3'
miRNA:   3'- gaUCGUGGCaGCUGG---UUG-GCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 131973 0.66 0.919806
Target:  5'- -gAGaCGCCGUUGccuACCGggcggcgcGCCGcCGCCGa -3'
miRNA:   3'- gaUC-GUGGCAGC---UGGU--------UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 88104 0.66 0.91418
Target:  5'- -gGGCACagCGUCGGCCGgcGCgGUUGCg- -3'
miRNA:   3'- gaUCGUG--GCAGCUGGU--UGgCAGCGgc -5'
24371 5' -56.7 NC_005264.1 + 121881 0.66 0.921992
Target:  5'- --cGCGCCGUcgcccgcugcggcugCGAUCGACCGgggCGCgGc -3'
miRNA:   3'- gauCGUGGCA---------------GCUGGUUGGCa--GCGgC- -5'
24371 5' -56.7 NC_005264.1 + 126092 0.67 0.861202
Target:  5'- -cGGCGCCGgcCGGC--GCCGUCGCg- -3'
miRNA:   3'- gaUCGUGGCa-GCUGguUGGCAGCGgc -5'
24371 5' -56.7 NC_005264.1 + 130445 0.66 0.91418
Target:  5'- -cAGCACaaaGUCGcggcggacGCCGGCCGccggcauccUCGCCa -3'
miRNA:   3'- gaUCGUGg--CAGC--------UGGUUGGC---------AGCGGc -5'
24371 5' -56.7 NC_005264.1 + 21537 0.67 0.8582
Target:  5'- -cAGCACCGggCGACCGuuuaugguguucuCCGaggaCGCCGg -3'
miRNA:   3'- gaUCGUGGCa-GCUGGUu------------GGCa---GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 80968 0.7 0.749902
Target:  5'- -aGGCGCCaUCGACCAAuuucuuccUCGaCGCCGa -3'
miRNA:   3'- gaUCGUGGcAGCUGGUU--------GGCaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.