miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 8317 0.66 0.908327
Target:  5'- --uGCGCCG-CGGCgucGCCGUCGUCc -3'
miRNA:   3'- gauCGUGGCaGCUGgu-UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 51414 0.66 0.908327
Target:  5'- aUGGCguacGCCGggGAgCcGCCGUCGCCc -3'
miRNA:   3'- gAUCG----UGGCagCUgGuUGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 34753 0.66 0.908327
Target:  5'- --cGCGCCgGUCG-CC-GCUGUCGCUa -3'
miRNA:   3'- gauCGUGG-CAGCuGGuUGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 154821 0.66 0.908327
Target:  5'- gUGGCGCCGUCGuggcgggcGCCucuGCCGgcccCGCa- -3'
miRNA:   3'- gAUCGUGGCAGC--------UGGu--UGGCa---GCGgc -5'
24371 5' -56.7 NC_005264.1 + 127344 0.66 0.908327
Target:  5'- --uGCGCCG-CGGCgucGCCGUCGUCc -3'
miRNA:   3'- gauCGUGGCaGCUGgu-UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 116941 0.66 0.908327
Target:  5'- -cGGCuCCGUCGAUgAGCCG-C-CCGa -3'
miRNA:   3'- gaUCGuGGCAGCUGgUUGGCaGcGGC- -5'
24371 5' -56.7 NC_005264.1 + 91078 0.66 0.906526
Target:  5'- -cGGCGCCagcagGUCGGCUAgucguaacgcgaugGCUGUCGCgGa -3'
miRNA:   3'- gaUCGUGG-----CAGCUGGU--------------UGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 105308 0.66 0.902248
Target:  5'- aUGGCGCCuucugUGGCCAACCaucaCGCCa -3'
miRNA:   3'- gAUCGUGGca---GCUGGUUGGca--GCGGc -5'
24371 5' -56.7 NC_005264.1 + 155559 0.66 0.902248
Target:  5'- --cGCACUGgcggGGCUcuCCGUCGCCa -3'
miRNA:   3'- gauCGUGGCag--CUGGuuGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 122794 0.66 0.895945
Target:  5'- -gGGCGCUG-CGGgcccuuggUCGACCGcCGCCGa -3'
miRNA:   3'- gaUCGUGGCaGCU--------GGUUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 46536 0.66 0.895945
Target:  5'- -aAGUucCCGUCGAaggccaCAGCCGUaGCCGc -3'
miRNA:   3'- gaUCGu-GGCAGCUg-----GUUGGCAgCGGC- -5'
24371 5' -56.7 NC_005264.1 + 21065 0.66 0.895945
Target:  5'- uUAGCG-CGUUGGCCAagccauauGCCGugcUCGCCu -3'
miRNA:   3'- gAUCGUgGCAGCUGGU--------UGGC---AGCGGc -5'
24371 5' -56.7 NC_005264.1 + 21921 0.66 0.895945
Target:  5'- gUAGUGCUGUCu-UCAACgGUUGCCGc -3'
miRNA:   3'- gAUCGUGGCAGcuGGUUGgCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 3768 0.66 0.895945
Target:  5'- -gGGCGCUG-CGGgcccuuggUCGACCGcCGCCGa -3'
miRNA:   3'- gaUCGUGGCaGCU--------GGUUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 138634 0.66 0.895945
Target:  5'- --cGCGCUGgcuUCGGCCAccggcACCG-CGCCa -3'
miRNA:   3'- gauCGUGGC---AGCUGGU-----UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 139069 0.66 0.895945
Target:  5'- -aGGCGCCGguu-CCuuGCUGUCGCCu -3'
miRNA:   3'- gaUCGUGGCagcuGGu-UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 104819 0.67 0.889422
Target:  5'- -gGGCGCCGcaCGACgGcCUGUcCGCCGg -3'
miRNA:   3'- gaUCGUGGCa-GCUGgUuGGCA-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 142871 0.67 0.889422
Target:  5'- --uGUugCGUCGACUcgcGCCG-CGCCu -3'
miRNA:   3'- gauCGugGCAGCUGGu--UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 75092 0.67 0.882682
Target:  5'- -cGGCGCUG-CGGCaggcGCCGgCGCCGa -3'
miRNA:   3'- gaUCGUGGCaGCUGgu--UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 156998 0.67 0.880618
Target:  5'- -gGGCgauaACCG-CGGCCAggcgaguggcggccACCGcCGCCGg -3'
miRNA:   3'- gaUCG----UGGCaGCUGGU--------------UGGCaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.