miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 43402 0.66 0.839961
Target:  5'- gGGCgCGAAGCCUACGUcucugguaGUCCG-CAacuCCa -3'
miRNA:   3'- -CUGgGCUUCGGAUGCG--------CGGGCaGU---GG- -5'
24372 3' -58.8 NC_005264.1 + 21051 0.67 0.801781
Target:  5'- gGACCUGGccGGCCUuaGCGCGUuggccaagccauaugCCGugcUCGCCu -3'
miRNA:   3'- -CUGGGCU--UCGGA--UGCGCG---------------GGC---AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 121867 0.67 0.798306
Target:  5'- gGGCCgGucGCgCU-CGCGCC-GUCGCCc -3'
miRNA:   3'- -CUGGgCuuCG-GAuGCGCGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 119888 0.67 0.798306
Target:  5'- -cUCCGAGGCgUugcCGCGCCCGgacgUACg -3'
miRNA:   3'- cuGGGCUUCGgAu--GCGCGGGCa---GUGg -5'
24372 3' -58.8 NC_005264.1 + 62922 0.67 0.798306
Target:  5'- aGCCgCGcGGGCUUGCGCGgCCGcaaGCCg -3'
miRNA:   3'- cUGG-GC-UUCGGAUGCGCgGGCag-UGG- -5'
24372 3' -58.8 NC_005264.1 + 147248 0.67 0.771557
Target:  5'- --gCCGGAGCCgcaGCuGCGCCCGcaagcuUgGCCa -3'
miRNA:   3'- cugGGCUUCGGa--UG-CGCGGGC------AgUGG- -5'
24372 3' -58.8 NC_005264.1 + 158214 0.67 0.795685
Target:  5'- cGGCCCGGcgauuuucgagaacGcGCCUACGcCGCCgCGgCGCUg -3'
miRNA:   3'- -CUGGGCU--------------U-CGGAUGC-GCGG-GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 129085 0.67 0.753125
Target:  5'- aGGCCCGAAGCCUuccgGCaaCUGUUACa -3'
miRNA:   3'- -CUGGGCUUCGGAug--CGcgGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 152958 0.67 0.753125
Target:  5'- gGGCUgGGaaGGCCgugGCGCGCCgGgaccgCGCCc -3'
miRNA:   3'- -CUGGgCU--UCGGa--UGCGCGGgCa----GUGG- -5'
24372 3' -58.8 NC_005264.1 + 52433 0.67 0.766074
Target:  5'- gGGCCCGAcGCUUuugagcagcgucagcAUGCGCCCGcCGUCg -3'
miRNA:   3'- -CUGGGCUuCGGA---------------UGCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 85545 0.67 0.76882
Target:  5'- cGACCUGAAGCUgacguuggauucguUcgaGCGCgGCaCCGUgCACCa -3'
miRNA:   3'- -CUGGGCUUCGG--------------A---UGCG-CG-GGCA-GUGG- -5'
24372 3' -58.8 NC_005264.1 + 157791 0.67 0.770646
Target:  5'- cGACCCcu-GCCagaagggUACGUGCCuCGUC-CCg -3'
miRNA:   3'- -CUGGGcuuCGG-------AUGCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 53196 0.67 0.777901
Target:  5'- -cUCCGggGCCgcgaguugcaaccguCGCGCCCccCGCCc -3'
miRNA:   3'- cuGGGCuuCGGau-------------GCGCGGGcaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 13878 0.67 0.780601
Target:  5'- cGACCUGc--UCUACGCGUC-GUCGCCu -3'
miRNA:   3'- -CUGGGCuucGGAUGCGCGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 24216 0.67 0.780601
Target:  5'- --gCCGAAGCCaGCGCGCCgGgauaguaagaCACUc -3'
miRNA:   3'- cugGGCUUCGGaUGCGCGGgCa---------GUGG- -5'
24372 3' -58.8 NC_005264.1 + 158629 0.67 0.780601
Target:  5'- cGCCuagCGAAGCUUGCGUGgcaaaccuCCCGUC-CCu -3'
miRNA:   3'- cUGG---GCUUCGGAUGCGC--------GGGCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 137153 0.67 0.780601
Target:  5'- ---gCGggGCaUGCGCGuCCCGUC-CCu -3'
miRNA:   3'- cuggGCuuCGgAUGCGC-GGGCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 65463 0.67 0.78952
Target:  5'- cGGCCUGcGGGCCUGCGaGCUCGcaugCACg -3'
miRNA:   3'- -CUGGGC-UUCGGAUGCgCGGGCa---GUGg -5'
24372 3' -58.8 NC_005264.1 + 42769 0.67 0.78952
Target:  5'- -uCCCGcuAGCCg--GCGUCCGcCACCu -3'
miRNA:   3'- cuGGGCu-UCGGaugCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 8694 0.67 0.797433
Target:  5'- aACCCcuuGAAGaacucgcUCUGCGCGCgCGUgGCCg -3'
miRNA:   3'- cUGGG---CUUC-------GGAUGCGCGgGCAgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.