Results 81 - 100 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 157791 | 0.67 | 0.770646 |
Target: 5'- cGACCCcu-GCCagaagggUACGUGCCuCGUC-CCg -3' miRNA: 3'- -CUGGGcuuCGG-------AUGCGCGG-GCAGuGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 127848 | 0.68 | 0.743755 |
Target: 5'- cGGCCgGcGGUCUagaacccgGCGCGCgaauggggucuCCGUCGCCg -3' miRNA: 3'- -CUGGgCuUCGGA--------UGCGCG-----------GGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 94610 | 0.68 | 0.705438 |
Target: 5'- aGCCCGccGCCgGCGCGgauaCGUCAUCg -3' miRNA: 3'- cUGGGCuuCGGaUGCGCgg--GCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 75381 | 0.68 | 0.743755 |
Target: 5'- cAUUCGGAGUCguggUGCGCGCCacCGUCugCg -3' miRNA: 3'- cUGGGCUUCGG----AUGCGCGG--GCAGugG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 17551 | 0.68 | 0.743755 |
Target: 5'- aACCgGAAGCCUAgacCGCGgccucCCCGU-GCCa -3' miRNA: 3'- cUGGgCUUCGGAU---GCGC-----GGGCAgUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 93428 | 0.68 | 0.734292 |
Target: 5'- aACCCGGAGCCagUACGCuuuuguggcgcaGgUgGUCGCCg -3' miRNA: 3'- cUGGGCUUCGG--AUGCG------------CgGgCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 154451 | 0.68 | 0.743755 |
Target: 5'- aGCuCCGGcAGCUUcaACGCGCCgCGUCcggcGCCg -3' miRNA: 3'- cUG-GGCU-UCGGA--UGCGCGG-GCAG----UGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 9028 | 0.68 | 0.734292 |
Target: 5'- -uCCCGAcGCgUuCGCGCCUggcuuggggaaaGUCACCg -3' miRNA: 3'- cuGGGCUuCGgAuGCGCGGG------------CAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 145700 | 0.68 | 0.734292 |
Target: 5'- -gUCCGAc-CCUGCGCGCCCaa-GCCu -3' miRNA: 3'- cuGGGCUucGGAUGCGCGGGcagUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 87712 | 0.68 | 0.734292 |
Target: 5'- gGAUgCCGAGGCCUugGUGgCUuUCAUCg -3' miRNA: 3'- -CUG-GGCUUCGGAugCGCgGGcAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 104152 | 0.68 | 0.724746 |
Target: 5'- cGGCCgucauaGAGGCCgggUGCGCCUGcagCGCCg -3' miRNA: 3'- -CUGGg-----CUUCGGau-GCGCGGGCa--GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 153219 | 0.68 | 0.724746 |
Target: 5'- cGACCaGAucuGGCCUGCucaGCGCaguucgCGUCGCCu -3' miRNA: 3'- -CUGGgCU---UCGGAUG---CGCGg-----GCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 127022 | 0.68 | 0.723788 |
Target: 5'- gGGCCgccauugCGggGCCggcagAgGCGCCCGcCACg -3' miRNA: 3'- -CUGG-------GCuuCGGa----UgCGCGGGCaGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 114215 | 0.68 | 0.699597 |
Target: 5'- cGACgCCGGcuugcccaccuccccGGCCUACGCGUUU-UCGCCa -3' miRNA: 3'- -CUG-GGCU---------------UCGGAUGCGCGGGcAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 25517 | 0.68 | 0.694715 |
Target: 5'- cGACCCGuAAGCaugucuuCUGCGaugggugccguaCGCCCGcgUCGCCg -3' miRNA: 3'- -CUGGGC-UUCG-------GAUGC------------GCGGGC--AGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 7995 | 0.68 | 0.723788 |
Target: 5'- gGGCCgccauugCGggGCCggcagAgGCGCCCGcCACg -3' miRNA: 3'- -CUGG-------GCuuCGGa----UgCGCGGGCaGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 34192 | 0.68 | 0.724746 |
Target: 5'- cGACCaGAucuGGCCUGCucaGCGCaguucgCGUCGCCu -3' miRNA: 3'- -CUGGgCU---UCGGAUG---CGCGg-----GCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 96457 | 0.68 | 0.724746 |
Target: 5'- aGACCUGAuagauGCCUugGa-UCCGUCGCg -3' miRNA: 3'- -CUGGGCUu----CGGAugCgcGGGCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 33931 | 0.68 | 0.734292 |
Target: 5'- aGGCUgGGaaGGCCgugGCGCGCCgGgaccgCGCCc -3' miRNA: 3'- -CUGGgCU--UCGGa--UGCGCGGgCa----GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 35424 | 0.68 | 0.743755 |
Target: 5'- aGCuCCGGcAGCUUcaACGCGCCgCGUCcggcGCCg -3' miRNA: 3'- cUG-GGCU-UCGGA--UGCGCGG-GCAG----UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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