Results 141 - 150 of 150 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 24372 | 3' | -58.8 | NC_005264.1 | + | 67478 | 0.72 | 0.509526 |
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Target: 5'- aACCCGAGGCCgggcCGcCGCCC--CGCCg -3' miRNA: 3'- cUGGGCUUCGGau--GC-GCGGGcaGUGG- -5' |
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| 24372 | 3' | -58.8 | NC_005264.1 | + | 43897 | 0.73 | 0.454399 |
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Target: 5'- gGGCgCCGGAGaCgauaGCGCGgCCGUCGCCu -3' miRNA: 3'- -CUG-GGCUUCgGa---UGCGCgGGCAGUGG- -5' |
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| 24372 | 3' | -58.8 | NC_005264.1 | + | 13182 | 0.73 | 0.436747 |
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Target: 5'- cGACCUac-GCgCUGCGCGCggauCCGUCGCCg -3' miRNA: 3'- -CUGGGcuuCG-GAUGCGCG----GGCAGUGG- -5' |
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| 24372 | 3' | -58.8 | NC_005264.1 | + | 78415 | 0.73 | 0.419497 |
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Target: 5'- gGGCUagUGGuAGCCUACGCGUUCGUCGCg -3' miRNA: 3'- -CUGG--GCU-UCGGAUGCGCGGGCAGUGg -5' |
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| 24372 | 3' | -58.8 | NC_005264.1 | + | 132209 | 0.73 | 0.436747 |
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Target: 5'- cGACCUac-GCgCUGCGCGCggauCCGUCGCCg -3' miRNA: 3'- -CUGGGcuuCG-GAUGCGCG----GGCAGUGG- -5' |
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| 24372 | 3' | -58.8 | NC_005264.1 | + | 44433 | 0.74 | 0.394412 |
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Target: 5'- -uCCCGAGGCCUAUuauugguuugGUGCCCaUUACCa -3' miRNA: 3'- cuGGGCUUCGGAUG----------CGCGGGcAGUGG- -5' |
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| 24372 | 3' | -58.8 | NC_005264.1 | + | 156828 | 0.77 | 0.24764 |
|
Target: 5'- -cCCCGGAGCCUcCcCGCCCGUCgggGCCg -3' miRNA: 3'- cuGGGCUUCGGAuGcGCGGGCAG---UGG- -5' |
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| 24372 | 3' | -58.8 | NC_005264.1 | + | 37802 | 0.77 | 0.24764 |
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Target: 5'- -cCCCGGAGCCUcCcCGCCCGUCgggGCCg -3' miRNA: 3'- cuGGGCUUCGGAuGcGCGGGCAG---UGG- -5' |
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| 24372 | 3' | -58.8 | NC_005264.1 | + | 79723 | 0.82 | 0.128281 |
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Target: 5'- -cUCCGcGGCCUugGCGCCCGUCGgCg -3' miRNA: 3'- cuGGGCuUCGGAugCGCGGGCAGUgG- -5' |
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| 24372 | 3' | -58.8 | NC_005264.1 | + | 128701 | 1.12 | 0.001186 |
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Target: 5'- cGACCCGAAGCCUACGCGCCCGUCACCa -3' miRNA: 3'- -CUGGGCUUCGGAUGCGCGGGCAGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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