miRNA display CGI


Results 61 - 80 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 104152 0.68 0.724746
Target:  5'- cGGCCgucauaGAGGCCgggUGCGCCUGcagCGCCg -3'
miRNA:   3'- -CUGGg-----CUUCGGau-GCGCGGGCa--GUGG- -5'
24372 3' -58.8 NC_005264.1 + 153219 0.68 0.724746
Target:  5'- cGACCaGAucuGGCCUGCucaGCGCaguucgCGUCGCCu -3'
miRNA:   3'- -CUGGgCU---UCGGAUG---CGCGg-----GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 127022 0.68 0.723788
Target:  5'- gGGCCgccauugCGggGCCggcagAgGCGCCCGcCACg -3'
miRNA:   3'- -CUGG-------GCuuCGGa----UgCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 94610 0.68 0.705438
Target:  5'- aGCCCGccGCCgGCGCGgauaCGUCAUCg -3'
miRNA:   3'- cUGGGCuuCGGaUGCGCgg--GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 114215 0.68 0.699597
Target:  5'- cGACgCCGGcuugcccaccuccccGGCCUACGCGUUU-UCGCCa -3'
miRNA:   3'- -CUG-GGCU---------------UCGGAUGCGCGGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 25517 0.68 0.694715
Target:  5'- cGACCCGuAAGCaugucuuCUGCGaugggugccguaCGCCCGcgUCGCCg -3'
miRNA:   3'- -CUGGGC-UUCG-------GAUGC------------GCGGGC--AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 87109 0.68 0.715126
Target:  5'- cACCCaGAcuGGCCUcCgGCGCCCGcggggcgCACCa -3'
miRNA:   3'- cUGGG-CU--UCGGAuG-CGCGGGCa------GUGG- -5'
24372 3' -58.8 NC_005264.1 + 9028 0.68 0.734292
Target:  5'- -uCCCGAcGCgUuCGCGCCUggcuuggggaaaGUCACCg -3'
miRNA:   3'- cuGGGCUuCGgAuGCGCGGG------------CAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 50318 0.68 0.715126
Target:  5'- cGGCCUGGAGCCgcgagUACGCGgC-GUCgACCu -3'
miRNA:   3'- -CUGGGCUUCGG-----AUGCGCgGgCAG-UGG- -5'
24372 3' -58.8 NC_005264.1 + 65463 0.67 0.78952
Target:  5'- cGGCCUGcGGGCCUGCGaGCUCGcaugCACg -3'
miRNA:   3'- -CUGGGC-UUCGGAUGCgCGGGCa---GUGg -5'
24372 3' -58.8 NC_005264.1 + 143428 0.67 0.752193
Target:  5'- cACCCGgcGCCU-CGCcuCCCccaucauGUCGCCa -3'
miRNA:   3'- cUGGGCuuCGGAuGCGc-GGG-------CAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 106580 0.67 0.753125
Target:  5'- uGACUCGGAGg--ACGaUGCCCGcCACCu -3'
miRNA:   3'- -CUGGGCUUCggaUGC-GCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 21051 0.67 0.801781
Target:  5'- gGACCUGGccGGCCUuaGCGCGUuggccaagccauaugCCGugcUCGCCu -3'
miRNA:   3'- -CUGGGCU--UCGGA--UGCGCG---------------GGC---AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 121867 0.67 0.798306
Target:  5'- gGGCCgGucGCgCU-CGCGCC-GUCGCCc -3'
miRNA:   3'- -CUGGgCuuCG-GAuGCGCGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 119888 0.67 0.798306
Target:  5'- -cUCCGAGGCgUugcCGCGCCCGgacgUACg -3'
miRNA:   3'- cuGGGCUUCGgAu--GCGCGGGCa---GUGg -5'
24372 3' -58.8 NC_005264.1 + 62922 0.67 0.798306
Target:  5'- aGCCgCGcGGGCUUGCGCGgCCGcaaGCCg -3'
miRNA:   3'- cUGG-GC-UUCGGAUGCGCgGGCag-UGG- -5'
24372 3' -58.8 NC_005264.1 + 8694 0.67 0.797433
Target:  5'- aACCCcuuGAAGaacucgcUCUGCGCGCgCGUgGCCg -3'
miRNA:   3'- cUGGG---CUUC-------GGAUGCGCGgGCAgUGG- -5'
24372 3' -58.8 NC_005264.1 + 158214 0.67 0.795685
Target:  5'- cGGCCCGGcgauuuucgagaacGcGCCUACGcCGCCgCGgCGCUg -3'
miRNA:   3'- -CUGGGCU--------------U-CGGAUGC-GCGG-GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 129085 0.67 0.753125
Target:  5'- aGGCCCGAAGCCUuccgGCaaCUGUUACa -3'
miRNA:   3'- -CUGGGCUUCGGAug--CGcgGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 42769 0.67 0.78952
Target:  5'- -uCCCGcuAGCCg--GCGUCCGcCACCu -3'
miRNA:   3'- cuGGGCu-UCGGaugCGCGGGCaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.