Results 101 - 120 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 24216 | 0.67 | 0.780601 |
Target: 5'- --gCCGAAGCCaGCGCGCCgGgauaguaagaCACUc -3' miRNA: 3'- cugGGCUUCGGaUGCGCGGgCa---------GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 62922 | 0.67 | 0.798306 |
Target: 5'- aGCCgCGcGGGCUUGCGCGgCCGcaaGCCg -3' miRNA: 3'- cUGG-GC-UUCGGAUGCGCgGGCag-UGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 129085 | 0.67 | 0.753125 |
Target: 5'- aGGCCCGAAGCCUuccgGCaaCUGUUACa -3' miRNA: 3'- -CUGGGCUUCGGAug--CGcgGGCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 152958 | 0.67 | 0.753125 |
Target: 5'- gGGCUgGGaaGGCCgugGCGCGCCgGgaccgCGCCc -3' miRNA: 3'- -CUGGgCU--UCGGa--UGCGCGGgCa----GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 52433 | 0.67 | 0.766074 |
Target: 5'- gGGCCCGAcGCUUuugagcagcgucagcAUGCGCCCGcCGUCg -3' miRNA: 3'- -CUGGGCUuCGGA---------------UGCGCGGGCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 85545 | 0.67 | 0.76882 |
Target: 5'- cGACCUGAAGCUgacguuggauucguUcgaGCGCgGCaCCGUgCACCa -3' miRNA: 3'- -CUGGGCUUCGG--------------A---UGCG-CG-GGCA-GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 157791 | 0.67 | 0.770646 |
Target: 5'- cGACCCcu-GCCagaagggUACGUGCCuCGUC-CCg -3' miRNA: 3'- -CUGGGcuuCGG-------AUGCGCGG-GCAGuGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 53196 | 0.67 | 0.777901 |
Target: 5'- -cUCCGggGCCgcgaguugcaaccguCGCGCCCccCGCCc -3' miRNA: 3'- cuGGGCuuCGGau-------------GCGCGGGcaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 13878 | 0.67 | 0.780601 |
Target: 5'- cGACCUGc--UCUACGCGUC-GUCGCCu -3' miRNA: 3'- -CUGGGCuucGGAUGCGCGGgCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 122647 | 0.66 | 0.815445 |
Target: 5'- gGGCCgCGAGGgCggGCGCGCUgacauuCGUCGCg -3' miRNA: 3'- -CUGG-GCUUCgGa-UGCGCGG------GCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 119250 | 0.66 | 0.815445 |
Target: 5'- -cCCCGAucGCUUucCGUGCCUGgCGCCa -3' miRNA: 3'- cuGGGCUu-CGGAu-GCGCGGGCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 114441 | 0.66 | 0.815445 |
Target: 5'- cACCCGcuccuGGCC-GC-CGCCCGaCGCCc -3' miRNA: 3'- cUGGGCu----UCGGaUGcGCGGGCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 120958 | 0.66 | 0.823783 |
Target: 5'- -cUCCGGcaagAGUCUguGCGCGgCCGUUGCCc -3' miRNA: 3'- cuGGGCU----UCGGA--UGCGCgGGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 122291 | 0.66 | 0.823783 |
Target: 5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3' miRNA: 3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 110725 | 0.66 | 0.815445 |
Target: 5'- cACCgGAGGCCUccugcucgcuuCGCGgCCuUCGCCg -3' miRNA: 3'- cUGGgCUUCGGAu----------GCGCgGGcAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 89235 | 0.66 | 0.815445 |
Target: 5'- cGCCCaGcAGGCCUGCG-GCCC--CACCc -3' miRNA: 3'- cUGGG-C-UUCGGAUGCgCGGGcaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 35382 | 0.66 | 0.815445 |
Target: 5'- aACCCGu--CCUACGCGCCaugaaCGUCGa- -3' miRNA: 3'- cUGGGCuucGGAUGCGCGG-----GCAGUgg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 48536 | 0.66 | 0.80695 |
Target: 5'- -uCCgCGucGuCCcGCGCGCCCccGUCGCCu -3' miRNA: 3'- cuGG-GCuuC-GGaUGCGCGGG--CAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 161493 | 0.66 | 0.815445 |
Target: 5'- aGACaCCGGgcucaGGUCUGCGUGucCCCGcUCGCUg -3' miRNA: 3'- -CUG-GGCU-----UCGGAUGCGC--GGGC-AGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 149384 | 0.66 | 0.815445 |
Target: 5'- -cCCCGcagGAGCCccuucgGCGcCGCCgCGUCGCg -3' miRNA: 3'- cuGGGC---UUCGGa-----UGC-GCGG-GCAGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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