miRNA display CGI


Results 41 - 60 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 129150 0.69 0.682949
Target:  5'- cGGCUCGGAGCgaUGCGCguuagccacgaucaGCCgGUUACCu -3'
miRNA:   3'- -CUGGGCUUCGg-AUGCG--------------CGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 68995 0.69 0.685896
Target:  5'- gGGCCaguGGCCcGCG-GCCCuGUCGCCa -3'
miRNA:   3'- -CUGGgcuUCGGaUGCgCGGG-CAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 30444 0.69 0.685896
Target:  5'- aGCUCGu-GCCUGCG-GCCaCGuUCACCa -3'
miRNA:   3'- cUGGGCuuCGGAUGCgCGG-GC-AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 15875 0.69 0.685896
Target:  5'- aGGCuCCGcAGCCUGCG-GCCUcagCGCCa -3'
miRNA:   3'- -CUG-GGCuUCGGAUGCgCGGGca-GUGG- -5'
24372 3' -58.8 NC_005264.1 + 29289 0.69 0.685896
Target:  5'- -uCCgGGAGCCgguaccucACGcCGCCCGUUACa -3'
miRNA:   3'- cuGGgCUUCGGa-------UGC-GCGGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 144837 0.69 0.68982
Target:  5'- cGACCCGccgccgucaGAGCCggugccggcuuugaACGCGCUCGcCAUCg -3'
miRNA:   3'- -CUGGGC---------UUCGGa-------------UGCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 25517 0.68 0.694715
Target:  5'- cGACCCGuAAGCaugucuuCUGCGaugggugccguaCGCCCGcgUCGCCg -3'
miRNA:   3'- -CUGGGC-UUCG-------GAUGC------------GCGGGC--AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 131648 0.68 0.695692
Target:  5'- cGCCUc-GGUCUGCgGUGCCCGcCGCCa -3'
miRNA:   3'- cUGGGcuUCGGAUG-CGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 114215 0.68 0.699597
Target:  5'- cGACgCCGGcuugcccaccuccccGGCCUACGCGUUU-UCGCCa -3'
miRNA:   3'- -CUG-GGCU---------------UCGGAUGCGCGGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 94610 0.68 0.705438
Target:  5'- aGCCCGccGCCgGCGCGgauaCGUCAUCg -3'
miRNA:   3'- cUGGGCuuCGGaUGCGCgg--GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 138241 0.68 0.715126
Target:  5'- -cCCCGGAGUagagGCGCuGUUgGUCACCa -3'
miRNA:   3'- cuGGGCUUCGga--UGCG-CGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 87109 0.68 0.715126
Target:  5'- cACCCaGAcuGGCCUcCgGCGCCCGcggggcgCACCa -3'
miRNA:   3'- cUGGG-CU--UCGGAuG-CGCGGGCa------GUGG- -5'
24372 3' -58.8 NC_005264.1 + 50318 0.68 0.715126
Target:  5'- cGGCCUGGAGCCgcgagUACGCGgC-GUCgACCu -3'
miRNA:   3'- -CUGGGCUUCGG-----AUGCGCgGgCAG-UGG- -5'
24372 3' -58.8 NC_005264.1 + 7995 0.68 0.723788
Target:  5'- gGGCCgccauugCGggGCCggcagAgGCGCCCGcCACg -3'
miRNA:   3'- -CUGG-------GCuuCGGa----UgCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 127022 0.68 0.723788
Target:  5'- gGGCCgccauugCGggGCCggcagAgGCGCCCGcCACg -3'
miRNA:   3'- -CUGG-------GCuuCGGa----UgCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 34192 0.68 0.724746
Target:  5'- cGACCaGAucuGGCCUGCucaGCGCaguucgCGUCGCCu -3'
miRNA:   3'- -CUGGgCU---UCGGAUG---CGCGg-----GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 153219 0.68 0.724746
Target:  5'- cGACCaGAucuGGCCUGCucaGCGCaguucgCGUCGCCu -3'
miRNA:   3'- -CUGGgCU---UCGGAUG---CGCGg-----GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 104152 0.68 0.724746
Target:  5'- cGGCCgucauaGAGGCCgggUGCGCCUGcagCGCCg -3'
miRNA:   3'- -CUGGg-----CUUCGGau-GCGCGGGCa--GUGG- -5'
24372 3' -58.8 NC_005264.1 + 96457 0.68 0.724746
Target:  5'- aGACCUGAuagauGCCUugGa-UCCGUCGCg -3'
miRNA:   3'- -CUGGGCUu----CGGAugCgcGGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 145700 0.68 0.734292
Target:  5'- -gUCCGAc-CCUGCGCGCCCaa-GCCu -3'
miRNA:   3'- cuGGGCUucGGAUGCGCGGGcagUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.