Results 81 - 100 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 16914 | 0.67 | 0.762396 |
Target: 5'- aGGCCCau-GCCcGCGCuGaCCCGcCGCCg -3' miRNA: 3'- -CUGGGcuuCGGaUGCG-C-GGGCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 147078 | 0.67 | 0.762396 |
Target: 5'- cGCCCGGAGCC-ACGCucGCgCG-CACa -3' miRNA: 3'- cUGGGCUUCGGaUGCG--CGgGCaGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 52433 | 0.67 | 0.766074 |
Target: 5'- gGGCCCGAcGCUUuugagcagcgucagcAUGCGCCCGcCGUCg -3' miRNA: 3'- -CUGGGCUuCGGA---------------UGCGCGGGCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 85545 | 0.67 | 0.76882 |
Target: 5'- cGACCUGAAGCUgacguuggauucguUcgaGCGCgGCaCCGUgCACCa -3' miRNA: 3'- -CUGGGCUUCGG--------------A---UGCG-CG-GGCA-GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 157791 | 0.67 | 0.770646 |
Target: 5'- cGACCCcu-GCCagaagggUACGUGCCuCGUC-CCg -3' miRNA: 3'- -CUGGGcuuCGG-------AUGCGCGG-GCAGuGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 38765 | 0.67 | 0.770646 |
Target: 5'- cGACCCcu-GCCagaagggUACGUGCCuCGUC-CCg -3' miRNA: 3'- -CUGGGcuuCGG-------AUGCGCGG-GCAGuGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 148934 | 0.67 | 0.771557 |
Target: 5'- -uCCUGGAcGUUcGCGC-CCCGUCGCCu -3' miRNA: 3'- cuGGGCUU-CGGaUGCGcGGGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 147248 | 0.67 | 0.771557 |
Target: 5'- --gCCGGAGCCgcaGCuGCGCCCGcaagcuUgGCCa -3' miRNA: 3'- cugGGCUUCGGa--UG-CGCGGGC------AgUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 53196 | 0.67 | 0.777901 |
Target: 5'- -cUCCGggGCCgcgaguugcaaccguCGCGCCCccCGCCc -3' miRNA: 3'- cuGGGCuuCGGau-------------GCGCGGGcaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 137153 | 0.67 | 0.780601 |
Target: 5'- ---gCGggGCaUGCGCGuCCCGUC-CCu -3' miRNA: 3'- cuggGCuuCGgAUGCGC-GGGCAGuGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 39602 | 0.67 | 0.780601 |
Target: 5'- cGCCuagCGAAGCUUGCGUGgcaaaccuCCCGUC-CCu -3' miRNA: 3'- cUGG---GCUUCGGAUGCGC--------GGGCAGuGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 137908 | 0.67 | 0.780601 |
Target: 5'- gGACCCGcAGCCggGCGauaaGaUCgCGUCACCc -3' miRNA: 3'- -CUGGGCuUCGGa-UGCg---C-GG-GCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 13878 | 0.67 | 0.780601 |
Target: 5'- cGACCUGc--UCUACGCGUC-GUCGCCu -3' miRNA: 3'- -CUGGGCuucGGAUGCGCGGgCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 24216 | 0.67 | 0.780601 |
Target: 5'- --gCCGAAGCCaGCGCGCCgGgauaguaagaCACUc -3' miRNA: 3'- cugGGCUUCGGaUGCGCGGgCa---------GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 158629 | 0.67 | 0.780601 |
Target: 5'- cGCCuagCGAAGCUUGCGUGgcaaaccuCCCGUC-CCu -3' miRNA: 3'- cUGG---GCUUCGGAUGCGC--------GGGCAGuGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 42769 | 0.67 | 0.78952 |
Target: 5'- -uCCCGcuAGCCg--GCGUCCGcCACCu -3' miRNA: 3'- cuGGGCu-UCGGaugCGCGGGCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 65463 | 0.67 | 0.78952 |
Target: 5'- cGGCCUGcGGGCCUGCGaGCUCGcaugCACg -3' miRNA: 3'- -CUGGGC-UUCGGAUGCgCGGGCa---GUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 158214 | 0.67 | 0.795685 |
Target: 5'- cGGCCCGGcgauuuucgagaacGcGCCUACGcCGCCgCGgCGCUg -3' miRNA: 3'- -CUGGGCU--------------U-CGGAUGC-GCGG-GCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 39187 | 0.67 | 0.795685 |
Target: 5'- cGGCCCGGcgauuuucgagaacGcGCCUACGcCGCCgCGgCGCUg -3' miRNA: 3'- -CUGGGCU--------------U-CGGAUGC-GCGG-GCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 8694 | 0.67 | 0.797433 |
Target: 5'- aACCCcuuGAAGaacucgcUCUGCGCGCgCGUgGCCg -3' miRNA: 3'- cUGGG---CUUC-------GGAUGCGCGgGCAgUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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