Results 101 - 120 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 62922 | 0.67 | 0.798306 |
Target: 5'- aGCCgCGcGGGCUUGCGCGgCCGcaaGCCg -3' miRNA: 3'- cUGG-GC-UUCGGAUGCGCgGGCag-UGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 119888 | 0.67 | 0.798306 |
Target: 5'- -cUCCGAGGCgUugcCGCGCCCGgacgUACg -3' miRNA: 3'- cuGGGCUUCGgAu--GCGCGGGCa---GUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 2841 | 0.67 | 0.798306 |
Target: 5'- gGGCCgGucGCgCU-CGCGCC-GUCGCCc -3' miRNA: 3'- -CUGGgCuuCG-GAuGCGCGGgCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 121867 | 0.67 | 0.798306 |
Target: 5'- gGGCCgGucGCgCU-CGCGCC-GUCGCCc -3' miRNA: 3'- -CUGGgCuuCG-GAuGCGCGGgCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 146446 | 0.67 | 0.798306 |
Target: 5'- -cCCCGAGuGCCaAUGCGCCaCGggCAUCc -3' miRNA: 3'- cuGGGCUU-CGGaUGCGCGG-GCa-GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 101595 | 0.67 | 0.798306 |
Target: 5'- cGCgCCGuGAGCUggaGCGCGCCa-UCGCCa -3' miRNA: 3'- cUG-GGC-UUCGGa--UGCGCGGgcAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 862 | 0.67 | 0.798306 |
Target: 5'- -cUCCGAGGCgUugcCGCGCCCGgacgUACg -3' miRNA: 3'- cuGGGCUUCGgAu--GCGCGGGCa---GUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 21483 | 0.67 | 0.798306 |
Target: 5'- -uCCUGAGGCUUugGCGUaugugaCGUgggCACCg -3' miRNA: 3'- cuGGGCUUCGGAugCGCGg-----GCA---GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 21051 | 0.67 | 0.801781 |
Target: 5'- gGACCUGGccGGCCUuaGCGCGUuggccaagccauaugCCGugcUCGCCu -3' miRNA: 3'- -CUGGGCU--UCGGA--UGCGCG---------------GGC---AGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 142622 | 0.66 | 0.80695 |
Target: 5'- cGCgCGggGCCacaUGCGUGCCaCGaUACCc -3' miRNA: 3'- cUGgGCuuCGG---AUGCGCGG-GCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 27796 | 0.66 | 0.80695 |
Target: 5'- aGCUCGAAGCCcAUGaaUuuGUCACCg -3' miRNA: 3'- cUGGGCUUCGGaUGCgcGggCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 102838 | 0.66 | 0.80695 |
Target: 5'- uGGgCCGcGGCC-ACGCGgCCGUCucgcucgcgGCCa -3' miRNA: 3'- -CUgGGCuUCGGaUGCGCgGGCAG---------UGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 48536 | 0.66 | 0.80695 |
Target: 5'- -uCCgCGucGuCCcGCGCGCCCccGUCGCCu -3' miRNA: 3'- cuGG-GCuuC-GGaUGCGCGGG--CAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 139423 | 0.66 | 0.80695 |
Target: 5'- gGGCaCCGcuGGCgUACGCGUgcucggCCGUCACa -3' miRNA: 3'- -CUG-GGCu-UCGgAUGCGCG------GGCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 154899 | 0.66 | 0.807806 |
Target: 5'- aGACgCCGcGGCCguggacgacgcguggACGCGCgCGUUGCUa -3' miRNA: 3'- -CUG-GGCuUCGGa--------------UGCGCGgGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 97388 | 0.66 | 0.812065 |
Target: 5'- aGGCCCGcAGGCCgugcagagucaaaACGUGCUCGaCACa -3' miRNA: 3'- -CUGGGC-UUCGGa------------UGCGCGGGCaGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 79891 | 0.66 | 0.814602 |
Target: 5'- cGGCUC-AGGCCUggucuuuGCGUGCgCGUgGCCg -3' miRNA: 3'- -CUGGGcUUCGGA-------UGCGCGgGCAgUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 149384 | 0.66 | 0.815445 |
Target: 5'- -cCCCGcagGAGCCccuucgGCGcCGCCgCGUCGCg -3' miRNA: 3'- cuGGGC---UUCGGa-----UGC-GCGG-GCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 89235 | 0.66 | 0.815445 |
Target: 5'- cGCCCaGcAGGCCUGCG-GCCC--CACCc -3' miRNA: 3'- cUGGG-C-UUCGGAUGCgCGGGcaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 119250 | 0.66 | 0.815445 |
Target: 5'- -cCCCGAucGCUUucCGUGCCUGgCGCCa -3' miRNA: 3'- cuGGGCUu-CGGAu-GCGCGGGCaGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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