Results 121 - 140 of 150 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 89235 | 0.66 | 0.815445 |
Target: 5'- cGCCCaGcAGGCCUGCG-GCCC--CACCc -3' miRNA: 3'- cUGGG-C-UUCGGAUGCgCGGGcaGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 35382 | 0.66 | 0.815445 |
Target: 5'- aACCCGu--CCUACGCGCCaugaaCGUCGa- -3' miRNA: 3'- cUGGGCuucGGAUGCGCGG-----GCAGUgg -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 110725 | 0.66 | 0.815445 |
Target: 5'- cACCgGAGGCCUccugcucgcuuCGCGgCCuUCGCCg -3' miRNA: 3'- cUGGgCUUCGGAu----------GCGCgGGcAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 3620 | 0.66 | 0.815445 |
Target: 5'- gGGCCgCGAGGgCggGCGCGCUgacauuCGUCGCg -3' miRNA: 3'- -CUGG-GCUUCgGa-UGCGCGG------GCAGUGg -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 161493 | 0.66 | 0.815445 |
Target: 5'- aGACaCCGGgcucaGGUCUGCGUGucCCCGcUCGCUg -3' miRNA: 3'- -CUG-GGCU-----UCGGAUGCGC--GGGC-AGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 122647 | 0.66 | 0.815445 |
Target: 5'- gGGCCgCGAGGgCggGCGCGCUgacauuCGUCGCg -3' miRNA: 3'- -CUGG-GCUUCgGa-UGCGCGG------GCAGUGg -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 223 | 0.66 | 0.815445 |
Target: 5'- -cCCCGAucGCUUucCGUGCCUGgCGCCa -3' miRNA: 3'- cuGGGCUu-CGGAu-GCGCGGGCaGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 30357 | 0.66 | 0.815445 |
Target: 5'- -cCCCGcagGAGCCccuucgGCGcCGCCgCGUCGCg -3' miRNA: 3'- cuGGGC---UUCGGa-----UGC-GCGG-GCAGUGg -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 42466 | 0.66 | 0.815445 |
Target: 5'- aGACaCCGGgcucaGGUCUGCGUGucCCCGcUCGCUg -3' miRNA: 3'- -CUG-GGCU-----UCGGAUGCGC--GGGC-AGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 106959 | 0.66 | 0.815445 |
Target: 5'- gGAUCUGAGGCCUguuGCGCuGUCUGaUC-CCa -3' miRNA: 3'- -CUGGGCUUCGGA---UGCG-CGGGC-AGuGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 103201 | 0.66 | 0.823783 |
Target: 5'- uGCUCGcuGCUUGCGaGCCCGcaCACCu -3' miRNA: 3'- cUGGGCuuCGGAUGCgCGGGCa-GUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 122291 | 0.66 | 0.823783 |
Target: 5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3' miRNA: 3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 1932 | 0.66 | 0.823783 |
Target: 5'- -cUCCGGcaagAGUCUguGCGCGgCCGUUGCCc -3' miRNA: 3'- cuGGGCU----UCGGA--UGCGCgGGCAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 3264 | 0.66 | 0.823783 |
Target: 5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3' miRNA: 3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 53567 | 0.66 | 0.823783 |
Target: 5'- aGCUCGcGGUacgACGCGCCCGaCGCg -3' miRNA: 3'- cUGGGCuUCGga-UGCGCGGGCaGUGg -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 87747 | 0.66 | 0.823783 |
Target: 5'- cGGCgCCGgcGCCUGCcgcaGCGCCgCGaagaACCa -3' miRNA: 3'- -CUG-GGCuuCGGAUG----CGCGG-GCag--UGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 120958 | 0.66 | 0.823783 |
Target: 5'- -cUCCGGcaagAGUCUguGCGCGgCCGUUGCCc -3' miRNA: 3'- cuGGGCU----UCGGA--UGCGCgGGCAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 155985 | 0.66 | 0.831148 |
Target: 5'- aGCCCGcacgacaGAGgUUGCGCGCUgG-CGCCa -3' miRNA: 3'- cUGGGC-------UUCgGAUGCGCGGgCaGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 5944 | 0.66 | 0.831148 |
Target: 5'- cGGCCCGAAcCCgcgGCGuUGCCUGUUgacgcacaggaauGCCa -3' miRNA: 3'- -CUGGGCUUcGGa--UGC-GCGGGCAG-------------UGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 36958 | 0.66 | 0.831148 |
Target: 5'- aGCCCGcacgacaGAGgUUGCGCGCUgG-CGCCa -3' miRNA: 3'- cUGGGC-------UUCgGAUGCGCGGgCaGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home