miRNA display CGI


Results 61 - 80 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 137908 0.67 0.780601
Target:  5'- gGACCCGcAGCCggGCGauaaGaUCgCGUCACCc -3'
miRNA:   3'- -CUGGGCuUCGGa-UGCg---C-GG-GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 53196 0.67 0.777901
Target:  5'- -cUCCGggGCCgcgaguugcaaccguCGCGCCCccCGCCc -3'
miRNA:   3'- cuGGGCuuCGGau-------------GCGCGGGcaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 147248 0.67 0.771557
Target:  5'- --gCCGGAGCCgcaGCuGCGCCCGcaagcuUgGCCa -3'
miRNA:   3'- cugGGCUUCGGa--UG-CGCGGGC------AgUGG- -5'
24372 3' -58.8 NC_005264.1 + 148934 0.67 0.771557
Target:  5'- -uCCUGGAcGUUcGCGC-CCCGUCGCCu -3'
miRNA:   3'- cuGGGCUU-CGGaUGCGcGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 157791 0.67 0.770646
Target:  5'- cGACCCcu-GCCagaagggUACGUGCCuCGUC-CCg -3'
miRNA:   3'- -CUGGGcuuCGG-------AUGCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 38765 0.67 0.770646
Target:  5'- cGACCCcu-GCCagaagggUACGUGCCuCGUC-CCg -3'
miRNA:   3'- -CUGGGcuuCGG-------AUGCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 85545 0.67 0.76882
Target:  5'- cGACCUGAAGCUgacguuggauucguUcgaGCGCgGCaCCGUgCACCa -3'
miRNA:   3'- -CUGGGCUUCGG--------------A---UGCG-CG-GGCA-GUGG- -5'
24372 3' -58.8 NC_005264.1 + 52433 0.67 0.766074
Target:  5'- gGGCCCGAcGCUUuugagcagcgucagcAUGCGCCCGcCGUCg -3'
miRNA:   3'- -CUGGGCUuCGGA---------------UGCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 100616 0.67 0.762396
Target:  5'- cGAcCCCGAagcGGCCgcggaGCGCGCCC-UCAa- -3'
miRNA:   3'- -CU-GGGCU---UCGGa----UGCGCGGGcAGUgg -5'
24372 3' -58.8 NC_005264.1 + 147078 0.67 0.762396
Target:  5'- cGCCCGGAGCC-ACGCucGCgCG-CACa -3'
miRNA:   3'- cUGGGCUUCGGaUGCG--CGgGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 16914 0.67 0.762396
Target:  5'- aGGCCCau-GCCcGCGCuGaCCCGcCGCCg -3'
miRNA:   3'- -CUGGGcuuCGGaUGCG-C-GGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 145147 0.67 0.761473
Target:  5'- cACCCGAcacgagccgccgcGGCCUcgGCuGCGCCUGagGCUa -3'
miRNA:   3'- cUGGGCU-------------UCGGA--UG-CGCGGGCagUGG- -5'
24372 3' -58.8 NC_005264.1 + 103815 0.67 0.753125
Target:  5'- gGACCgCGggGCU--UGCGCUCGauUCGCUg -3'
miRNA:   3'- -CUGG-GCuuCGGauGCGCGGGC--AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 129085 0.67 0.753125
Target:  5'- aGGCCCGAAGCCUuccgGCaaCUGUUACa -3'
miRNA:   3'- -CUGGGCUUCGGAug--CGcgGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 10058 0.67 0.753125
Target:  5'- aGGCCCGAAGCCUuccgGCaaCUGUUACa -3'
miRNA:   3'- -CUGGGCUUCGGAug--CGcgGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 45861 0.67 0.753125
Target:  5'- aGACUUcGAGUCUGCGCGCCgccaaugcaagCGaCACCa -3'
miRNA:   3'- -CUGGGcUUCGGAUGCGCGG-----------GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 152958 0.67 0.753125
Target:  5'- gGGCUgGGaaGGCCgugGCGCGCCgGgaccgCGCCc -3'
miRNA:   3'- -CUGGgCU--UCGGa--UGCGCGGgCa----GUGG- -5'
24372 3' -58.8 NC_005264.1 + 106580 0.67 0.753125
Target:  5'- uGACUCGGAGg--ACGaUGCCCGcCACCu -3'
miRNA:   3'- -CUGGGCUUCggaUGC-GCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 26596 0.67 0.753125
Target:  5'- aACCCauGAGCC---GUGUCCGUCGCCa -3'
miRNA:   3'- cUGGGc-UUCGGaugCGCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 47951 0.67 0.753125
Target:  5'- aGACCCGGu-CCaGCGUGCCCGUguuuuuCCa -3'
miRNA:   3'- -CUGGGCUucGGaUGCGCGGGCAgu----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.