miRNA display CGI


Results 41 - 60 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 37802 0.77 0.24764
Target:  5'- -cCCCGGAGCCUcCcCGCCCGUCgggGCCg -3'
miRNA:   3'- cuGGGCUUCGGAuGcGCGGGCAG---UGG- -5'
24372 3' -58.8 NC_005264.1 + 38654 0.66 0.831958
Target:  5'- aACCguCGAgaugauGGCCgcgGCgGCGCCCaUCACCa -3'
miRNA:   3'- cUGG--GCU------UCGGa--UG-CGCGGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 38765 0.67 0.770646
Target:  5'- cGACCCcu-GCCagaagggUACGUGCCuCGUC-CCg -3'
miRNA:   3'- -CUGGGcuuCGG-------AUGCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 39187 0.67 0.795685
Target:  5'- cGGCCCGGcgauuuucgagaacGcGCCUACGcCGCCgCGgCGCUg -3'
miRNA:   3'- -CUGGGCU--------------U-CGGAUGC-GCGG-GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 39602 0.67 0.780601
Target:  5'- cGCCuagCGAAGCUUGCGUGgcaaaccuCCCGUC-CCu -3'
miRNA:   3'- cUGG---GCUUCGGAUGCGC--------GGGCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 42466 0.66 0.815445
Target:  5'- aGACaCCGGgcucaGGUCUGCGUGucCCCGcUCGCUg -3'
miRNA:   3'- -CUG-GGCU-----UCGGAUGCGC--GGGC-AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 42769 0.67 0.78952
Target:  5'- -uCCCGcuAGCCg--GCGUCCGcCACCu -3'
miRNA:   3'- cuGGGCu-UCGGaugCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 43402 0.66 0.839961
Target:  5'- gGGCgCGAAGCCUACGUcucugguaGUCCG-CAacuCCa -3'
miRNA:   3'- -CUGgGCUUCGGAUGCG--------CGGGCaGU---GG- -5'
24372 3' -58.8 NC_005264.1 + 43897 0.73 0.454399
Target:  5'- gGGCgCCGGAGaCgauaGCGCGgCCGUCGCCu -3'
miRNA:   3'- -CUG-GGCUUCgGa---UGCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 44433 0.74 0.394412
Target:  5'- -uCCCGAGGCCUAUuauugguuugGUGCCCaUUACCa -3'
miRNA:   3'- cuGGGCUUCGGAUG----------CGCGGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 44871 0.7 0.577067
Target:  5'- aGAUCUGcAGCCUggggagGCGgGCCCGUCGUCg -3'
miRNA:   3'- -CUGGGCuUCGGA------UGCgCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 45861 0.67 0.753125
Target:  5'- aGACUUcGAGUCUGCGCGCCgccaaugcaagCGaCACCa -3'
miRNA:   3'- -CUGGGcUUCGGAUGCGCGG-----------GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 47951 0.67 0.753125
Target:  5'- aGACCCGGu-CCaGCGUGCCCGUguuuuuCCa -3'
miRNA:   3'- -CUGGGCUucGGaUGCGCGGGCAgu----GG- -5'
24372 3' -58.8 NC_005264.1 + 48536 0.66 0.80695
Target:  5'- -uCCgCGucGuCCcGCGCGCCCccGUCGCCu -3'
miRNA:   3'- cuGG-GCuuC-GGaUGCGCGGG--CAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 50318 0.68 0.715126
Target:  5'- cGGCCUGGAGCCgcgagUACGCGgC-GUCgACCu -3'
miRNA:   3'- -CUGGGCUUCGG-----AUGCGCgGgCAG-UGG- -5'
24372 3' -58.8 NC_005264.1 + 52433 0.67 0.766074
Target:  5'- gGGCCCGAcGCUUuugagcagcgucagcAUGCGCCCGcCGUCg -3'
miRNA:   3'- -CUGGGCUuCGGA---------------UGCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 53196 0.67 0.777901
Target:  5'- -cUCCGggGCCgcgaguugcaaccguCGCGCCCccCGCCc -3'
miRNA:   3'- cuGGGCuuCGGau-------------GCGCGGGcaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 53567 0.66 0.823783
Target:  5'- aGCUCGcGGUacgACGCGCCCGaCGCg -3'
miRNA:   3'- cUGGGCuUCGga-UGCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 55623 0.71 0.528529
Target:  5'- uGGCgCCGAAuGCCaaccGCGCGCgCCGcCGCCu -3'
miRNA:   3'- -CUG-GGCUU-CGGa---UGCGCG-GGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 60347 0.71 0.547788
Target:  5'- -cCCCG-AGCCcaUAgGCGCCCGagcCACCa -3'
miRNA:   3'- cuGGGCuUCGG--AUgCGCGGGCa--GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.