miRNA display CGI


Results 81 - 100 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 93428 0.68 0.734292
Target:  5'- aACCCGGAGCCagUACGCuuuuguggcgcaGgUgGUCGCCg -3'
miRNA:   3'- cUGGGCUUCGG--AUGCG------------CgGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 94610 0.68 0.705438
Target:  5'- aGCCCGccGCCgGCGCGgauaCGUCAUCg -3'
miRNA:   3'- cUGGGCuuCGGaUGCGCgg--GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 96457 0.68 0.724746
Target:  5'- aGACCUGAuagauGCCUugGa-UCCGUCGCg -3'
miRNA:   3'- -CUGGGCUu----CGGAugCgcGGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 97388 0.66 0.812065
Target:  5'- aGGCCCGcAGGCCgugcagagucaaaACGUGCUCGaCACa -3'
miRNA:   3'- -CUGGGC-UUCGGa------------UGCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 97717 0.71 0.538129
Target:  5'- --aCCGAGGgCUugGCGUCgCGuUCACCg -3'
miRNA:   3'- cugGGCUUCgGAugCGCGG-GC-AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 97839 0.66 0.839961
Target:  5'- uACuuGGAcGaacaCUGCaaGCCCGUCACCc -3'
miRNA:   3'- cUGggCUU-Cg---GAUGcgCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 100616 0.67 0.762396
Target:  5'- cGAcCCCGAagcGGCCgcggaGCGCGCCC-UCAa- -3'
miRNA:   3'- -CU-GGGCU---UCGGa----UGCGCGGGcAGUgg -5'
24372 3' -58.8 NC_005264.1 + 100779 0.69 0.646373
Target:  5'- gGGCCC-AAGCCaUGCGCGCCCaa-AUCu -3'
miRNA:   3'- -CUGGGcUUCGG-AUGCGCGGGcagUGG- -5'
24372 3' -58.8 NC_005264.1 + 101595 0.67 0.798306
Target:  5'- cGCgCCGuGAGCUggaGCGCGCCa-UCGCCa -3'
miRNA:   3'- cUG-GGC-UUCGGa--UGCGCGGgcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 102838 0.66 0.80695
Target:  5'- uGGgCCGcGGCC-ACGCGgCCGUCucgcucgcgGCCa -3'
miRNA:   3'- -CUgGGCuUCGGaUGCGCgGGCAG---------UGG- -5'
24372 3' -58.8 NC_005264.1 + 103201 0.66 0.823783
Target:  5'- uGCUCGcuGCUUGCGaGCCCGcaCACCu -3'
miRNA:   3'- cUGGGCuuCGGAUGCgCGGGCa-GUGG- -5'
24372 3' -58.8 NC_005264.1 + 103815 0.67 0.753125
Target:  5'- gGACCgCGggGCU--UGCGCUCGauUCGCUg -3'
miRNA:   3'- -CUGG-GCuuCGGauGCGCGGGC--AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 104152 0.68 0.724746
Target:  5'- cGGCCgucauaGAGGCCgggUGCGCCUGcagCGCCg -3'
miRNA:   3'- -CUGGg-----CUUCGGau-GCGCGGGCa--GUGG- -5'
24372 3' -58.8 NC_005264.1 + 106421 0.69 0.646373
Target:  5'- aGACCCGAAGCUcgACgGCGCCgCGcUCGa- -3'
miRNA:   3'- -CUGGGCUUCGGa-UG-CGCGG-GC-AGUgg -5'
24372 3' -58.8 NC_005264.1 + 106580 0.67 0.753125
Target:  5'- uGACUCGGAGg--ACGaUGCCCGcCACCu -3'
miRNA:   3'- -CUGGGCUUCggaUGC-GCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 106959 0.66 0.815445
Target:  5'- gGAUCUGAGGCCUguuGCGCuGUCUGaUC-CCa -3'
miRNA:   3'- -CUGGGCUUCGGA---UGCG-CGGGC-AGuGG- -5'
24372 3' -58.8 NC_005264.1 + 109561 0.66 0.843113
Target:  5'- -cCCCGAAGCCcGCGCgGCCaggaucuagcgaaaaCGUCuugucuaugGCCg -3'
miRNA:   3'- cuGGGCUUCGGaUGCG-CGG---------------GCAG---------UGG- -5'
24372 3' -58.8 NC_005264.1 + 110725 0.66 0.815445
Target:  5'- cACCgGAGGCCUccugcucgcuuCGCGgCCuUCGCCg -3'
miRNA:   3'- cUGGgCUUCGGAu----------GCGCgGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 110979 0.69 0.653316
Target:  5'- cGCCCGAGGagaccgucucCCUAcugcgcuccaugacCGUGCCCGUCAUUc -3'
miRNA:   3'- cUGGGCUUC----------GGAU--------------GCGCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 114215 0.68 0.699597
Target:  5'- cGACgCCGGcuugcccaccuccccGGCCUACGCGUUU-UCGCCa -3'
miRNA:   3'- -CUG-GGCU---------------UCGGAUGCGCGGGcAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.