miRNA display CGI


Results 101 - 120 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 114441 0.66 0.815445
Target:  5'- cACCCGcuccuGGCC-GC-CGCCCGaCGCCc -3'
miRNA:   3'- cUGGGCu----UCGGaUGcGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 116991 0.71 0.528529
Target:  5'- aGACUCGAAGUCUugGgGgCgGUCugCg -3'
miRNA:   3'- -CUGGGCUUCGGAugCgCgGgCAGugG- -5'
24372 3' -58.8 NC_005264.1 + 119250 0.66 0.815445
Target:  5'- -cCCCGAucGCUUucCGUGCCUGgCGCCa -3'
miRNA:   3'- cuGGGCUu-CGGAu-GCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 119888 0.67 0.798306
Target:  5'- -cUCCGAGGCgUugcCGCGCCCGgacgUACg -3'
miRNA:   3'- cuGGGCUUCGgAu--GCGCGGGCa---GUGg -5'
24372 3' -58.8 NC_005264.1 + 120958 0.66 0.823783
Target:  5'- -cUCCGGcaagAGUCUguGCGCGgCCGUUGCCc -3'
miRNA:   3'- cuGGGCU----UCGGA--UGCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 121867 0.67 0.798306
Target:  5'- gGGCCgGucGCgCU-CGCGCC-GUCGCCc -3'
miRNA:   3'- -CUGGgCuuCG-GAuGCGCGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 122291 0.66 0.823783
Target:  5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3'
miRNA:   3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 122647 0.66 0.815445
Target:  5'- gGGCCgCGAGGgCggGCGCGCUgacauuCGUCGCg -3'
miRNA:   3'- -CUGG-GCUUCgGa-UGCGCGG------GCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 122790 0.7 0.586908
Target:  5'- --gCCGggGCgCUGCGgGCCCuugGUCgACCg -3'
miRNA:   3'- cugGGCuuCG-GAUGCgCGGG---CAG-UGG- -5'
24372 3' -58.8 NC_005264.1 + 125168 0.72 0.463368
Target:  5'- ---gCGAGGgCcGCGCGCCCGUCGCg -3'
miRNA:   3'- cuggGCUUCgGaUGCGCGGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 125272 0.7 0.586908
Target:  5'- aGACuuGccGCCUccguCGCGgUCGUCGCCg -3'
miRNA:   3'- -CUGggCuuCGGAu---GCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 127022 0.68 0.723788
Target:  5'- gGGCCgccauugCGggGCCggcagAgGCGCCCGcCACg -3'
miRNA:   3'- -CUGG-------GCuuCGGa----UgCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 127848 0.68 0.743755
Target:  5'- cGGCCgGcGGUCUagaacccgGCGCGCgaauggggucuCCGUCGCCg -3'
miRNA:   3'- -CUGGgCuUCGGA--------UGCGCG-----------GGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 128701 1.12 0.001186
Target:  5'- cGACCCGAAGCCUACGCGCCCGUCACCa -3'
miRNA:   3'- -CUGGGCUUCGGAUGCGCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 129085 0.67 0.753125
Target:  5'- aGGCCCGAAGCCUuccgGCaaCUGUUACa -3'
miRNA:   3'- -CUGGGCUUCGGAug--CGcgGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 129150 0.69 0.682949
Target:  5'- cGGCUCGGAGCgaUGCGCguuagccacgaucaGCCgGUUACCu -3'
miRNA:   3'- -CUGGGCUUCGg-AUGCG--------------CGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 130825 0.69 0.671126
Target:  5'- aGCCCGAGGCgguuccgcagcauccCUaucgauggcgcuguaGCGCgcaucggacacgcgGCCCGUCGCCg -3'
miRNA:   3'- cUGGGCUUCG---------------GA---------------UGCG--------------CGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 131217 0.71 0.548757
Target:  5'- -cCCCGAGGCauggucgcagggcgaUGCGCGCCgCcUCGCCa -3'
miRNA:   3'- cuGGGCUUCGg--------------AUGCGCGG-GcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 131648 0.68 0.695692
Target:  5'- cGCCUc-GGUCUGCgGUGCCCGcCGCCa -3'
miRNA:   3'- cUGGGcuUCGGAUG-CGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 131974 0.71 0.538129
Target:  5'- aGACgCCGuuGCCUACcgggcgGCGCgCCGcCGCCg -3'
miRNA:   3'- -CUG-GGCuuCGGAUG------CGCG-GGCaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.