miRNA display CGI


Results 121 - 140 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 132209 0.73 0.436747
Target:  5'- cGACCUac-GCgCUGCGCGCggauCCGUCGCCg -3'
miRNA:   3'- -CUGGGcuuCG-GAUGCGCG----GGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 137153 0.67 0.780601
Target:  5'- ---gCGggGCaUGCGCGuCCCGUC-CCu -3'
miRNA:   3'- cuggGCuuCGgAUGCGC-GGGCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 137908 0.67 0.780601
Target:  5'- gGACCCGcAGCCggGCGauaaGaUCgCGUCACCc -3'
miRNA:   3'- -CUGGGCuUCGGa-UGCg---C-GG-GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 138241 0.68 0.715126
Target:  5'- -cCCCGGAGUagagGCGCuGUUgGUCACCa -3'
miRNA:   3'- cuGGGCUUCGga--UGCG-CGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 139423 0.66 0.80695
Target:  5'- gGGCaCCGcuGGCgUACGCGUgcucggCCGUCACa -3'
miRNA:   3'- -CUG-GGCu-UCGgAUGCGCG------GGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 142622 0.66 0.80695
Target:  5'- cGCgCGggGCCacaUGCGUGCCaCGaUACCc -3'
miRNA:   3'- cUGgGCuuCGG---AUGCGCGG-GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 143428 0.67 0.752193
Target:  5'- cACCCGgcGCCU-CGCcuCCCccaucauGUCGCCa -3'
miRNA:   3'- cUGGGCuuCGGAuGCGc-GGG-------CAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 144411 0.71 0.567262
Target:  5'- cGACCCcgcGCCgagcgagaggGCGCGCCUG-CGCCg -3'
miRNA:   3'- -CUGGGcuuCGGa---------UGCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 144837 0.69 0.68982
Target:  5'- cGACCCGccgccgucaGAGCCggugccggcuuugaACGCGCUCGcCAUCg -3'
miRNA:   3'- -CUGGGC---------UUCGGa-------------UGCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 145147 0.67 0.761473
Target:  5'- cACCCGAcacgagccgccgcGGCCUcgGCuGCGCCUGagGCUa -3'
miRNA:   3'- cUGGGCU-------------UCGGA--UG-CGCGGGCagUGG- -5'
24372 3' -58.8 NC_005264.1 + 145700 0.68 0.734292
Target:  5'- -gUCCGAc-CCUGCGCGCCCaa-GCCu -3'
miRNA:   3'- cuGGGCUucGGAUGCGCGGGcagUGG- -5'
24372 3' -58.8 NC_005264.1 + 146446 0.67 0.798306
Target:  5'- -cCCCGAGuGCCaAUGCGCCaCGggCAUCc -3'
miRNA:   3'- cuGGGCUU-CGGaUGCGCGG-GCa-GUGG- -5'
24372 3' -58.8 NC_005264.1 + 147078 0.67 0.762396
Target:  5'- cGCCCGGAGCC-ACGCucGCgCG-CACa -3'
miRNA:   3'- cUGGGCUUCGGaUGCG--CGgGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 147248 0.67 0.771557
Target:  5'- --gCCGGAGCCgcaGCuGCGCCCGcaagcuUgGCCa -3'
miRNA:   3'- cugGGCUUCGGa--UG-CGCGGGC------AgUGG- -5'
24372 3' -58.8 NC_005264.1 + 148934 0.67 0.771557
Target:  5'- -uCCUGGAcGUUcGCGC-CCCGUCGCCu -3'
miRNA:   3'- cuGGGCUU-CGGaUGCGcGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 149384 0.66 0.815445
Target:  5'- -cCCCGcagGAGCCccuucgGCGcCGCCgCGUCGCg -3'
miRNA:   3'- cuGGGC---UUCGGa-----UGC-GCGG-GCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 152958 0.67 0.753125
Target:  5'- gGGCUgGGaaGGCCgugGCGCGCCgGgaccgCGCCc -3'
miRNA:   3'- -CUGGgCU--UCGGa--UGCGCGGgCa----GUGG- -5'
24372 3' -58.8 NC_005264.1 + 153219 0.68 0.724746
Target:  5'- cGACCaGAucuGGCCUGCucaGCGCaguucgCGUCGCCu -3'
miRNA:   3'- -CUGGgCU---UCGGAUG---CGCGg-----GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 154451 0.68 0.743755
Target:  5'- aGCuCCGGcAGCUUcaACGCGCCgCGUCcggcGCCg -3'
miRNA:   3'- cUG-GGCU-UCGGA--UGCGCGG-GCAG----UGG- -5'
24372 3' -58.8 NC_005264.1 + 154899 0.66 0.807806
Target:  5'- aGACgCCGcGGCCguggacgacgcguggACGCGCgCGUUGCUa -3'
miRNA:   3'- -CUG-GGCuUCGGa--------------UGCGCGgGCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.