miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 145147 0.67 0.761473
Target:  5'- cACCCGAcacgagccgccgcGGCCUcgGCuGCGCCUGagGCUa -3'
miRNA:   3'- cUGGGCU-------------UCGGA--UG-CGCGGGCagUGG- -5'
24372 3' -58.8 NC_005264.1 + 144837 0.69 0.68982
Target:  5'- cGACCCGccgccgucaGAGCCggugccggcuuugaACGCGCUCGcCAUCg -3'
miRNA:   3'- -CUGGGC---------UUCGGa-------------UGCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 144411 0.71 0.567262
Target:  5'- cGACCCcgcGCCgagcgagaggGCGCGCCUG-CGCCg -3'
miRNA:   3'- -CUGGGcuuCGGa---------UGCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 143428 0.67 0.752193
Target:  5'- cACCCGgcGCCU-CGCcuCCCccaucauGUCGCCa -3'
miRNA:   3'- cUGGGCuuCGGAuGCGc-GGG-------CAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 142622 0.66 0.80695
Target:  5'- cGCgCGggGCCacaUGCGUGCCaCGaUACCc -3'
miRNA:   3'- cUGgGCuuCGG---AUGCGCGG-GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 139423 0.66 0.80695
Target:  5'- gGGCaCCGcuGGCgUACGCGUgcucggCCGUCACa -3'
miRNA:   3'- -CUG-GGCu-UCGgAUGCGCG------GGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 138241 0.68 0.715126
Target:  5'- -cCCCGGAGUagagGCGCuGUUgGUCACCa -3'
miRNA:   3'- cuGGGCUUCGga--UGCG-CGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 137908 0.67 0.780601
Target:  5'- gGACCCGcAGCCggGCGauaaGaUCgCGUCACCc -3'
miRNA:   3'- -CUGGGCuUCGGa-UGCg---C-GG-GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 137153 0.67 0.780601
Target:  5'- ---gCGggGCaUGCGCGuCCCGUC-CCu -3'
miRNA:   3'- cuggGCuuCGgAUGCGC-GGGCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 132209 0.73 0.436747
Target:  5'- cGACCUac-GCgCUGCGCGCggauCCGUCGCCg -3'
miRNA:   3'- -CUGGGcuuCG-GAUGCGCG----GGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 131974 0.71 0.538129
Target:  5'- aGACgCCGuuGCCUACcgggcgGCGCgCCGcCGCCg -3'
miRNA:   3'- -CUG-GGCuuCGGAUG------CGCG-GGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 131648 0.68 0.695692
Target:  5'- cGCCUc-GGUCUGCgGUGCCCGcCGCCa -3'
miRNA:   3'- cUGGGcuUCGGAUG-CGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 131217 0.71 0.548757
Target:  5'- -cCCCGAGGCauggucgcagggcgaUGCGCGCCgCcUCGCCa -3'
miRNA:   3'- cuGGGCUUCGg--------------AUGCGCGG-GcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 130825 0.69 0.671126
Target:  5'- aGCCCGAGGCgguuccgcagcauccCUaucgauggcgcuguaGCGCgcaucggacacgcgGCCCGUCGCCg -3'
miRNA:   3'- cUGGGCUUCG---------------GA---------------UGCG--------------CGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 129150 0.69 0.682949
Target:  5'- cGGCUCGGAGCgaUGCGCguuagccacgaucaGCCgGUUACCu -3'
miRNA:   3'- -CUGGGCUUCGg-AUGCG--------------CGGgCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 129085 0.67 0.753125
Target:  5'- aGGCCCGAAGCCUuccgGCaaCUGUUACa -3'
miRNA:   3'- -CUGGGCUUCGGAug--CGcgGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 128701 1.12 0.001186
Target:  5'- cGACCCGAAGCCUACGCGCCCGUCACCa -3'
miRNA:   3'- -CUGGGCUUCGGAUGCGCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 127848 0.68 0.743755
Target:  5'- cGGCCgGcGGUCUagaacccgGCGCGCgaauggggucuCCGUCGCCg -3'
miRNA:   3'- -CUGGgCuUCGGA--------UGCGCG-----------GGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 127022 0.68 0.723788
Target:  5'- gGGCCgccauugCGggGCCggcagAgGCGCCCGcCACg -3'
miRNA:   3'- -CUGG-------GCuuCGGa----UgCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 125272 0.7 0.586908
Target:  5'- aGACuuGccGCCUccguCGCGgUCGUCGCCg -3'
miRNA:   3'- -CUGggCuuCGGAu---GCGCgGGCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.