Results 61 - 80 of 150 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 102838 | 0.66 | 0.80695 |
Target: 5'- uGGgCCGcGGCC-ACGCGgCCGUCucgcucgcgGCCa -3' miRNA: 3'- -CUgGGCuUCGGaUGCGCgGGCAG---------UGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 101595 | 0.67 | 0.798306 |
Target: 5'- cGCgCCGuGAGCUggaGCGCGCCa-UCGCCa -3' miRNA: 3'- cUG-GGC-UUCGGa--UGCGCGGgcAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 100779 | 0.69 | 0.646373 |
Target: 5'- gGGCCC-AAGCCaUGCGCGCCCaa-AUCu -3' miRNA: 3'- -CUGGGcUUCGG-AUGCGCGGGcagUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 100616 | 0.67 | 0.762396 |
Target: 5'- cGAcCCCGAagcGGCCgcggaGCGCGCCC-UCAa- -3' miRNA: 3'- -CU-GGGCU---UCGGa----UGCGCGGGcAGUgg -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 97839 | 0.66 | 0.839961 |
Target: 5'- uACuuGGAcGaacaCUGCaaGCCCGUCACCc -3' miRNA: 3'- cUGggCUU-Cg---GAUGcgCGGGCAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 97717 | 0.71 | 0.538129 |
Target: 5'- --aCCGAGGgCUugGCGUCgCGuUCACCg -3' miRNA: 3'- cugGGCUUCgGAugCGCGG-GC-AGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 97388 | 0.66 | 0.812065 |
Target: 5'- aGGCCCGcAGGCCgugcagagucaaaACGUGCUCGaCACa -3' miRNA: 3'- -CUGGGC-UUCGGa------------UGCGCGGGCaGUGg -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 96457 | 0.68 | 0.724746 |
Target: 5'- aGACCUGAuagauGCCUugGa-UCCGUCGCg -3' miRNA: 3'- -CUGGGCUu----CGGAugCgcGGGCAGUGg -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 94610 | 0.68 | 0.705438 |
Target: 5'- aGCCCGccGCCgGCGCGgauaCGUCAUCg -3' miRNA: 3'- cUGGGCuuCGGaUGCGCgg--GCAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 93428 | 0.68 | 0.734292 |
Target: 5'- aACCCGGAGCCagUACGCuuuuguggcgcaGgUgGUCGCCg -3' miRNA: 3'- cUGGGCUUCGG--AUGCG------------CgGgCAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 92250 | 0.71 | 0.547788 |
Target: 5'- aGGCCCGccucGCCaaGCGCGCUCuUCGCCa -3' miRNA: 3'- -CUGGGCuu--CGGa-UGCGCGGGcAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 89235 | 0.66 | 0.815445 |
Target: 5'- cGCCCaGcAGGCCUGCG-GCCC--CACCc -3' miRNA: 3'- cUGGG-C-UUCGGAUGCgCGGGcaGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 87747 | 0.66 | 0.823783 |
Target: 5'- cGGCgCCGgcGCCUGCcgcaGCGCCgCGaagaACCa -3' miRNA: 3'- -CUG-GGCuuCGGAUG----CGCGG-GCag--UGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 87712 | 0.68 | 0.734292 |
Target: 5'- gGAUgCCGAGGCCUugGUGgCUuUCAUCg -3' miRNA: 3'- -CUG-GGCUUCGGAugCGCgGGcAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 87109 | 0.68 | 0.715126 |
Target: 5'- cACCCaGAcuGGCCUcCgGCGCCCGcggggcgCACCa -3' miRNA: 3'- cUGGG-CU--UCGGAuG-CGCGGGCa------GUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 86731 | 0.71 | 0.567262 |
Target: 5'- aGACCCccucuGAuGCCgcgcuguuCGCGCCCGUagaGCCg -3' miRNA: 3'- -CUGGG-----CUuCGGau------GCGCGGGCAg--UGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 86485 | 0.7 | 0.626517 |
Target: 5'- uACCaacgcGCCUGCGCGCa-GUCGCCg -3' miRNA: 3'- cUGGgcuu-CGGAUGCGCGggCAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 85848 | 0.71 | 0.557501 |
Target: 5'- gGACCCGGagggaGGCCcauagaugGCGUGCuuGUgACCa -3' miRNA: 3'- -CUGGGCU-----UCGGa-------UGCGCGggCAgUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 85545 | 0.67 | 0.76882 |
Target: 5'- cGACCUGAAGCUgacguuggauucguUcgaGCGCgGCaCCGUgCACCa -3' miRNA: 3'- -CUGGGCUUCGG--------------A---UGCG-CG-GGCA-GUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 83396 | 0.66 | 0.843113 |
Target: 5'- cGCUCGucGUCUGCGCGCCgCGggucguugagaaucgUCAUCc -3' miRNA: 3'- cUGGGCuuCGGAUGCGCGG-GC---------------AGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home