miRNA display CGI


Results 81 - 100 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 82123 0.71 0.547788
Target:  5'- uACCUGuauauaguacuAAGCggUGCGCGCCCGUUGCCu -3'
miRNA:   3'- cUGGGC-----------UUCGg-AUGCGCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 79891 0.66 0.814602
Target:  5'- cGGCUC-AGGCCUggucuuuGCGUGCgCGUgGCCg -3'
miRNA:   3'- -CUGGGcUUCGGA-------UGCGCGgGCAgUGG- -5'
24372 3' -58.8 NC_005264.1 + 79723 0.82 0.128281
Target:  5'- -cUCCGcGGCCUugGCGCCCGUCGgCg -3'
miRNA:   3'- cuGGGCuUCGGAugCGCGGGCAGUgG- -5'
24372 3' -58.8 NC_005264.1 + 78415 0.73 0.419497
Target:  5'- gGGCUagUGGuAGCCUACGCGUUCGUCGCg -3'
miRNA:   3'- -CUGG--GCU-UCGGAUGCGCGGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 77902 0.69 0.672113
Target:  5'- cACCCGgcGCCacacuacaacagaGCGCGCagccaUCGUCGCCa -3'
miRNA:   3'- cUGGGCuuCGGa------------UGCGCG-----GGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 75381 0.68 0.743755
Target:  5'- cAUUCGGAGUCguggUGCGCGCCacCGUCugCg -3'
miRNA:   3'- cUGGGCUUCGG----AUGCGCGG--GCAGugG- -5'
24372 3' -58.8 NC_005264.1 + 68995 0.69 0.685896
Target:  5'- gGGCCaguGGCCcGCG-GCCCuGUCGCCa -3'
miRNA:   3'- -CUGGgcuUCGGaUGCgCGGG-CAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 67478 0.72 0.509526
Target:  5'- aACCCGAGGCCgggcCGcCGCCC--CGCCg -3'
miRNA:   3'- cUGGGCUUCGGau--GC-GCGGGcaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 65463 0.67 0.78952
Target:  5'- cGGCCUGcGGGCCUGCGaGCUCGcaugCACg -3'
miRNA:   3'- -CUGGGC-UUCGGAUGCgCGGGCa---GUGg -5'
24372 3' -58.8 NC_005264.1 + 62922 0.67 0.798306
Target:  5'- aGCCgCGcGGGCUUGCGCGgCCGcaaGCCg -3'
miRNA:   3'- cUGG-GC-UUCGGAUGCGCgGGCag-UGG- -5'
24372 3' -58.8 NC_005264.1 + 60347 0.71 0.547788
Target:  5'- -cCCCG-AGCCcaUAgGCGCCCGagcCACCa -3'
miRNA:   3'- cuGGGCuUCGG--AUgCGCGGGCa--GUGG- -5'
24372 3' -58.8 NC_005264.1 + 55623 0.71 0.528529
Target:  5'- uGGCgCCGAAuGCCaaccGCGCGCgCCGcCGCCu -3'
miRNA:   3'- -CUG-GGCUU-CGGa---UGCGCG-GGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 53567 0.66 0.823783
Target:  5'- aGCUCGcGGUacgACGCGCCCGaCGCg -3'
miRNA:   3'- cUGGGCuUCGga-UGCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 53196 0.67 0.777901
Target:  5'- -cUCCGggGCCgcgaguugcaaccguCGCGCCCccCGCCc -3'
miRNA:   3'- cuGGGCuuCGGau-------------GCGCGGGcaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 52433 0.67 0.766074
Target:  5'- gGGCCCGAcGCUUuugagcagcgucagcAUGCGCCCGcCGUCg -3'
miRNA:   3'- -CUGGGCUuCGGA---------------UGCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 50318 0.68 0.715126
Target:  5'- cGGCCUGGAGCCgcgagUACGCGgC-GUCgACCu -3'
miRNA:   3'- -CUGGGCUUCGG-----AUGCGCgGgCAG-UGG- -5'
24372 3' -58.8 NC_005264.1 + 48536 0.66 0.80695
Target:  5'- -uCCgCGucGuCCcGCGCGCCCccGUCGCCu -3'
miRNA:   3'- cuGG-GCuuC-GGaUGCGCGGG--CAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 47951 0.67 0.753125
Target:  5'- aGACCCGGu-CCaGCGUGCCCGUguuuuuCCa -3'
miRNA:   3'- -CUGGGCUucGGaUGCGCGGGCAgu----GG- -5'
24372 3' -58.8 NC_005264.1 + 45861 0.67 0.753125
Target:  5'- aGACUUcGAGUCUGCGCGCCgccaaugcaagCGaCACCa -3'
miRNA:   3'- -CUGGGcUUCGGAUGCGCGG-----------GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 44871 0.7 0.577067
Target:  5'- aGAUCUGcAGCCUggggagGCGgGCCCGUCGUCg -3'
miRNA:   3'- -CUGGGCuUCGGA------UGCgCGGGCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.