miRNA display CGI


Results 101 - 120 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 44433 0.74 0.394412
Target:  5'- -uCCCGAGGCCUAUuauugguuugGUGCCCaUUACCa -3'
miRNA:   3'- cuGGGCUUCGGAUG----------CGCGGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 43897 0.73 0.454399
Target:  5'- gGGCgCCGGAGaCgauaGCGCGgCCGUCGCCu -3'
miRNA:   3'- -CUG-GGCUUCgGa---UGCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 43402 0.66 0.839961
Target:  5'- gGGCgCGAAGCCUACGUcucugguaGUCCG-CAacuCCa -3'
miRNA:   3'- -CUGgGCUUCGGAUGCG--------CGGGCaGU---GG- -5'
24372 3' -58.8 NC_005264.1 + 42769 0.67 0.78952
Target:  5'- -uCCCGcuAGCCg--GCGUCCGcCACCu -3'
miRNA:   3'- cuGGGCu-UCGGaugCGCGGGCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 42466 0.66 0.815445
Target:  5'- aGACaCCGGgcucaGGUCUGCGUGucCCCGcUCGCUg -3'
miRNA:   3'- -CUG-GGCU-----UCGGAUGCGC--GGGC-AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 39602 0.67 0.780601
Target:  5'- cGCCuagCGAAGCUUGCGUGgcaaaccuCCCGUC-CCu -3'
miRNA:   3'- cUGG---GCUUCGGAUGCGC--------GGGCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 39187 0.67 0.795685
Target:  5'- cGGCCCGGcgauuuucgagaacGcGCCUACGcCGCCgCGgCGCUg -3'
miRNA:   3'- -CUGGGCU--------------U-CGGAUGC-GCGG-GCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 38765 0.67 0.770646
Target:  5'- cGACCCcu-GCCagaagggUACGUGCCuCGUC-CCg -3'
miRNA:   3'- -CUGGGcuuCGG-------AUGCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 38654 0.66 0.831958
Target:  5'- aACCguCGAgaugauGGCCgcgGCgGCGCCCaUCACCa -3'
miRNA:   3'- cUGG--GCU------UCGGa--UG-CGCGGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 37802 0.77 0.24764
Target:  5'- -cCCCGGAGCCUcCcCGCCCGUCgggGCCg -3'
miRNA:   3'- cuGGGCUUCGGAuGcGCGGGCAG---UGG- -5'
24372 3' -58.8 NC_005264.1 + 36958 0.66 0.831148
Target:  5'- aGCCCGcacgacaGAGgUUGCGCGCUgG-CGCCa -3'
miRNA:   3'- cUGGGC-------UUCgGAUGCGCGGgCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 36059 0.69 0.636447
Target:  5'- uGCCCGAcuGCCgACGCggagaGCCCGUUuCCg -3'
miRNA:   3'- cUGGGCUu-CGGaUGCG-----CGGGCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 35424 0.68 0.743755
Target:  5'- aGCuCCGGcAGCUUcaACGCGCCgCGUCcggcGCCg -3'
miRNA:   3'- cUG-GGCU-UCGGA--UGCGCGG-GCAG----UGG- -5'
24372 3' -58.8 NC_005264.1 + 35382 0.66 0.815445
Target:  5'- aACCCGu--CCUACGCGCCaugaaCGUCGa- -3'
miRNA:   3'- cUGGGCuucGGAUGCGCGG-----GCAGUgg -5'
24372 3' -58.8 NC_005264.1 + 34192 0.68 0.724746
Target:  5'- cGACCaGAucuGGCCUGCucaGCGCaguucgCGUCGCCu -3'
miRNA:   3'- -CUGGgCU---UCGGAUG---CGCGg-----GCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 33931 0.68 0.734292
Target:  5'- aGGCUgGGaaGGCCgugGCGCGCCgGgaccgCGCCc -3'
miRNA:   3'- -CUGGgCU--UCGGa--UGCGCGGgCa----GUGG- -5'
24372 3' -58.8 NC_005264.1 + 30444 0.69 0.685896
Target:  5'- aGCUCGu-GCCUGCG-GCCaCGuUCACCa -3'
miRNA:   3'- cUGGGCuuCGGAUGCgCGG-GC-AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 30357 0.66 0.815445
Target:  5'- -cCCCGcagGAGCCccuucgGCGcCGCCgCGUCGCg -3'
miRNA:   3'- cuGGGC---UUCGGa-----UGC-GCGG-GCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 29289 0.69 0.685896
Target:  5'- -uCCgGGAGCCgguaccucACGcCGCCCGUUACa -3'
miRNA:   3'- cuGGgCUUCGGa-------UGC-GCGGGCAGUGg -5'
24372 3' -58.8 NC_005264.1 + 27796 0.66 0.80695
Target:  5'- aGCUCGAAGCCcAUGaaUuuGUCACCg -3'
miRNA:   3'- cUGGGCUUCGGaUGCgcGggCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.