Results 121 - 140 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 26596 | 0.67 | 0.753125 |
Target: 5'- aACCCauGAGCC---GUGUCCGUCGCCa -3' miRNA: 3'- cUGGGc-UUCGGaugCGCGGGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 25517 | 0.68 | 0.694715 |
Target: 5'- cGACCCGuAAGCaugucuuCUGCGaugggugccguaCGCCCGcgUCGCCg -3' miRNA: 3'- -CUGGGC-UUCG-------GAUGC------------GCGGGC--AGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 24216 | 0.67 | 0.780601 |
Target: 5'- --gCCGAAGCCaGCGCGCCgGgauaguaagaCACUc -3' miRNA: 3'- cugGGCUUCGGaUGCGCGGgCa---------GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 21483 | 0.67 | 0.798306 |
Target: 5'- -uCCUGAGGCUUugGCGUaugugaCGUgggCACCg -3' miRNA: 3'- cuGGGCUUCGGAugCGCGg-----GCA---GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 21251 | 0.66 | 0.839961 |
Target: 5'- cGGCUCG-AGUgUGCGCGCCgCGgaggugguaaCGCCa -3' miRNA: 3'- -CUGGGCuUCGgAUGCGCGG-GCa---------GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 21051 | 0.67 | 0.801781 |
Target: 5'- gGACCUGGccGGCCUuaGCGCGUuggccaagccauaugCCGugcUCGCCu -3' miRNA: 3'- -CUGGGCU--UCGGA--UGCGCG---------------GGC---AGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 17551 | 0.68 | 0.743755 |
Target: 5'- aACCgGAAGCCUAgacCGCGgccucCCCGU-GCCa -3' miRNA: 3'- cUGGgCUUCGGAU---GCGC-----GGGCAgUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 16914 | 0.67 | 0.762396 |
Target: 5'- aGGCCCau-GCCcGCGCuGaCCCGcCGCCg -3' miRNA: 3'- -CUGGGcuuCGGaUGCG-C-GGGCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 15875 | 0.69 | 0.685896 |
Target: 5'- aGGCuCCGcAGCCUGCG-GCCUcagCGCCa -3' miRNA: 3'- -CUG-GGCuUCGGAUGCgCGGGca-GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 13878 | 0.67 | 0.780601 |
Target: 5'- cGACCUGc--UCUACGCGUC-GUCGCCu -3' miRNA: 3'- -CUGGGCuucGGAUGCGCGGgCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 13182 | 0.73 | 0.436747 |
Target: 5'- cGACCUac-GCgCUGCGCGCggauCCGUCGCCg -3' miRNA: 3'- -CUGGGcuuCG-GAUGCGCG----GGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 12948 | 0.69 | 0.676058 |
Target: 5'- aGACgCCGuuGCCUACcgggcgGCGCgCGcCGCCg -3' miRNA: 3'- -CUG-GGCuuCGGAUG------CGCGgGCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 12190 | 0.71 | 0.548757 |
Target: 5'- -cCCCGAGGCauggucgcagggcgaUGCGCGCCgCcUCGCCa -3' miRNA: 3'- cuGGGCUUCGg--------------AUGCGCGG-GcAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 11860 | 0.66 | 0.840751 |
Target: 5'- cGACCCu-AGCCUACGguagaacgccuugcaGCCgGUgCACCc -3' miRNA: 3'- -CUGGGcuUCGGAUGCg--------------CGGgCA-GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 11799 | 0.69 | 0.671126 |
Target: 5'- aGCCCGAGGCgguuccgcagcauccCUaucgauggcgcuguaGCGCgcaucggacacgcgGCCCGUCGCCg -3' miRNA: 3'- cUGGGCUUCG---------------GA---------------UGCG--------------CGGGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 10092 | 0.66 | 0.831958 |
Target: 5'- cGCCgGggGCau-CGCGgCCGUguCCg -3' miRNA: 3'- cUGGgCuuCGgauGCGCgGGCAguGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 10058 | 0.67 | 0.753125 |
Target: 5'- aGGCCCGAAGCCUuccgGCaaCUGUUACa -3' miRNA: 3'- -CUGGGCUUCGGAug--CGcgGGCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 9028 | 0.68 | 0.734292 |
Target: 5'- -uCCCGAcGCgUuCGCGCCUggcuuggggaaaGUCACCg -3' miRNA: 3'- cuGGGCUuCGgAuGCGCGGG------------CAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 8694 | 0.67 | 0.797433 |
Target: 5'- aACCCcuuGAAGaacucgcUCUGCGCGCgCGUgGCCg -3' miRNA: 3'- cUGGG---CUUC-------GGAUGCGCGgGCAgUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 7995 | 0.68 | 0.723788 |
Target: 5'- gGGCCgccauugCGggGCCggcagAgGCGCCCGcCACg -3' miRNA: 3'- -CUGG-------GCuuCGGa----UgCGCGGGCaGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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