Results 41 - 60 of 150 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 125168 | 0.72 | 0.463368 |
Target: 5'- ---gCGAGGgCcGCGCGCCCGUCGCg -3' miRNA: 3'- cuggGCUUCgGaUGCGCGGGCAGUGg -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 132209 | 0.73 | 0.436747 |
Target: 5'- cGACCUac-GCgCUGCGCGCggauCCGUCGCCg -3' miRNA: 3'- -CUGGGcuuCG-GAUGCGCG----GGCAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 78415 | 0.73 | 0.419497 |
Target: 5'- gGGCUagUGGuAGCCUACGCGUUCGUCGCg -3' miRNA: 3'- -CUGG--GCU-UCGGAUGCGCGGGCAGUGg -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 44433 | 0.74 | 0.394412 |
Target: 5'- -uCCCGAGGCCUAUuauugguuugGUGCCCaUUACCa -3' miRNA: 3'- cuGGGCUUCGGAUG----------CGCGGGcAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 156828 | 0.77 | 0.24764 |
Target: 5'- -cCCCGGAGCCUcCcCGCCCGUCgggGCCg -3' miRNA: 3'- cuGGGCUUCGGAuGcGCGGGCAG---UGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 155086 | 0.69 | 0.636447 |
Target: 5'- uGCCCGAcuGCCgACGCggagaGCCCGUUuCCg -3' miRNA: 3'- cUGGGCUu-CGGaUGCG-----CGGGCAGuGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 100779 | 0.69 | 0.646373 |
Target: 5'- gGGCCC-AAGCCaUGCGCGCCCaa-AUCu -3' miRNA: 3'- -CUGGGcUUCGG-AUGCGCGGGcagUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 87712 | 0.68 | 0.734292 |
Target: 5'- gGAUgCCGAGGCCUugGUGgCUuUCAUCg -3' miRNA: 3'- -CUG-GGCUUCGGAugCGCgGGcAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 104152 | 0.68 | 0.724746 |
Target: 5'- cGGCCgucauaGAGGCCgggUGCGCCUGcagCGCCg -3' miRNA: 3'- -CUGGg-----CUUCGGau-GCGCGGGCa--GUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 153219 | 0.68 | 0.724746 |
Target: 5'- cGACCaGAucuGGCCUGCucaGCGCaguucgCGUCGCCu -3' miRNA: 3'- -CUGGgCU---UCGGAUG---CGCGg-----GCAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 127022 | 0.68 | 0.723788 |
Target: 5'- gGGCCgccauugCGggGCCggcagAgGCGCCCGcCACg -3' miRNA: 3'- -CUGG-------GCuuCGGa----UgCGCGGGCaGUGg -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 94610 | 0.68 | 0.705438 |
Target: 5'- aGCCCGccGCCgGCGCGgauaCGUCAUCg -3' miRNA: 3'- cUGGGCuuCGGaUGCGCgg--GCAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 114215 | 0.68 | 0.699597 |
Target: 5'- cGACgCCGGcuugcccaccuccccGGCCUACGCGUUU-UCGCCa -3' miRNA: 3'- -CUG-GGCU---------------UCGGAUGCGCGGGcAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 25517 | 0.68 | 0.694715 |
Target: 5'- cGACCCGuAAGCaugucuuCUGCGaugggugccguaCGCCCGcgUCGCCg -3' miRNA: 3'- -CUGGGC-UUCG-------GAUGC------------GCGGGC--AGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 144837 | 0.69 | 0.68982 |
Target: 5'- cGACCCGccgccgucaGAGCCggugccggcuuugaACGCGCUCGcCAUCg -3' miRNA: 3'- -CUGGGC---------UUCGGa-------------UGCGCGGGCaGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 29289 | 0.69 | 0.685896 |
Target: 5'- -uCCgGGAGCCgguaccucACGcCGCCCGUUACa -3' miRNA: 3'- cuGGgCUUCGGa-------UGC-GCGGGCAGUGg -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 15875 | 0.69 | 0.685896 |
Target: 5'- aGGCuCCGcAGCCUGCG-GCCUcagCGCCa -3' miRNA: 3'- -CUG-GGCuUCGGAUGCgCGGGca-GUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 30444 | 0.69 | 0.685896 |
Target: 5'- aGCUCGu-GCCUGCG-GCCaCGuUCACCa -3' miRNA: 3'- cUGGGCuuCGGAUGCgCGG-GC-AGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 77902 | 0.69 | 0.672113 |
Target: 5'- cACCCGgcGCCacacuacaacagaGCGCGCagccaUCGUCGCCa -3' miRNA: 3'- cUGGGCuuCGGa------------UGCGCG-----GGCAGUGG- -5' |
|||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 130825 | 0.69 | 0.671126 |
Target: 5'- aGCCCGAGGCgguuccgcagcauccCUaucgauggcgcuguaGCGCgcaucggacacgcgGCCCGUCGCCg -3' miRNA: 3'- cUGGGCUUCG---------------GA---------------UGCG--------------CGGGCAGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home