Results 81 - 100 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24372 | 3' | -58.8 | NC_005264.1 | + | 21483 | 0.67 | 0.798306 |
Target: 5'- -uCCUGAGGCUUugGCGUaugugaCGUgggCACCg -3' miRNA: 3'- cuGGGCUUCGGAugCGCGg-----GCA---GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 39187 | 0.67 | 0.795685 |
Target: 5'- cGGCCCGGcgauuuucgagaacGcGCCUACGcCGCCgCGgCGCUg -3' miRNA: 3'- -CUGGGCU--------------U-CGGAUGC-GCGG-GCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 137908 | 0.67 | 0.780601 |
Target: 5'- gGACCCGcAGCCggGCGauaaGaUCgCGUCACCc -3' miRNA: 3'- -CUGGGCuUCGGa-UGCg---C-GG-GCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 39602 | 0.67 | 0.780601 |
Target: 5'- cGCCuagCGAAGCUUGCGUGgcaaaccuCCCGUC-CCu -3' miRNA: 3'- cUGG---GCUUCGGAUGCGC--------GGGCAGuGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 148934 | 0.67 | 0.771557 |
Target: 5'- -uCCUGGAcGUUcGCGC-CCCGUCGCCu -3' miRNA: 3'- cuGGGCUU-CGGaUGCGcGGGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 97388 | 0.66 | 0.812065 |
Target: 5'- aGGCCCGcAGGCCgugcagagucaaaACGUGCUCGaCACa -3' miRNA: 3'- -CUGGGC-UUCGGa------------UGCGCGGGCaGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 42466 | 0.66 | 0.815445 |
Target: 5'- aGACaCCGGgcucaGGUCUGCGUGucCCCGcUCGCUg -3' miRNA: 3'- -CUG-GGCU-----UCGGAUGCGC--GGGC-AGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 43402 | 0.66 | 0.839961 |
Target: 5'- gGGCgCGAAGCCUACGUcucugguaGUCCG-CAacuCCa -3' miRNA: 3'- -CUGgGCUUCGGAUGCG--------CGGGCaGU---GG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 21251 | 0.66 | 0.839961 |
Target: 5'- cGGCUCG-AGUgUGCGCGCCgCGgaggugguaaCGCCa -3' miRNA: 3'- -CUGGGCuUCGgAUGCGCGG-GCa---------GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 157570 | 0.66 | 0.831958 |
Target: 5'- cGCCaCGAGGCCgggcuuggGCGCuucCCCGUaGCCc -3' miRNA: 3'- cUGG-GCUUCGGa-------UGCGc--GGGCAgUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 36958 | 0.66 | 0.831148 |
Target: 5'- aGCCCGcacgacaGAGgUUGCGCGCUgG-CGCCa -3' miRNA: 3'- cUGGGC-------UUCgGAUGCGCGGgCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 87747 | 0.66 | 0.823783 |
Target: 5'- cGGCgCCGgcGCCUGCcgcaGCGCCgCGaagaACCa -3' miRNA: 3'- -CUG-GGCuuCGGAUG----CGCGG-GCag--UGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 53567 | 0.66 | 0.823783 |
Target: 5'- aGCUCGcGGUacgACGCGCCCGaCGCg -3' miRNA: 3'- cUGGGCuUCGga-UGCGCGGGCaGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 3264 | 0.66 | 0.823783 |
Target: 5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3' miRNA: 3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 1932 | 0.66 | 0.823783 |
Target: 5'- -cUCCGGcaagAGUCUguGCGCGgCCGUUGCCc -3' miRNA: 3'- cuGGGCU----UCGGA--UGCGCgGGCAGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 103201 | 0.66 | 0.823783 |
Target: 5'- uGCUCGcuGCUUGCGaGCCCGcaCACCu -3' miRNA: 3'- cUGGGCuuCGGAUGCgCGGGCa-GUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 30357 | 0.66 | 0.815445 |
Target: 5'- -cCCCGcagGAGCCccuucgGCGcCGCCgCGUCGCg -3' miRNA: 3'- cuGGGC---UUCGGa-----UGC-GCGG-GCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 223 | 0.66 | 0.815445 |
Target: 5'- -cCCCGAucGCUUucCGUGCCUGgCGCCa -3' miRNA: 3'- cuGGGCUu-CGGAu-GCGCGGGCaGUGG- -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 3620 | 0.66 | 0.815445 |
Target: 5'- gGGCCgCGAGGgCggGCGCGCUgacauuCGUCGCg -3' miRNA: 3'- -CUGG-GCUUCgGa-UGCGCGG------GCAGUGg -5' |
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24372 | 3' | -58.8 | NC_005264.1 | + | 106959 | 0.66 | 0.815445 |
Target: 5'- gGAUCUGAGGCCUguuGCGCuGUCUGaUC-CCa -3' miRNA: 3'- -CUGGGCUUCGGA---UGCG-CGGGC-AGuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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